Coprinopsis cinerea (gray shag): CC1G_01113
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Entry
CC1G_01113 CDS
T01275
Name
(RefSeq) replication factor-A protein 1
KO
K07466
replication factor A1
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03030
DNA replication
cci03420
Nucleotide excision repair
cci03430
Mismatch repair
cci03440
Homologous recombination
cci03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CC1G_01113
03420 Nucleotide excision repair
CC1G_01113
03430 Mismatch repair
CC1G_01113
03440 Homologous recombination
CC1G_01113
03460 Fanconi anemia pathway
CC1G_01113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cci03000
]
CC1G_01113
03032 DNA replication proteins [BR:
cci03032
]
CC1G_01113
03400 DNA repair and recombination proteins [BR:
cci03400
]
CC1G_01113
Transcription factors [BR:
cci03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
CC1G_01113
DNA replication proteins [BR:
cci03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
CC1G_01113
DNA repair and recombination proteins [BR:
cci03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
CC1G_01113
MMR (mismatch excision repair)
CC1G_01113
DSBR (double strand breaks repair)
HR (homologous recombination)
CC1G_01113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
RADX
POT1
DUF223
Motif
Other DBs
NCBI-GeneID:
6009542
NCBI-ProteinID:
XP_001833051
UniProt:
A8NEJ9
LinkDB
All DBs
Position
2
AA seq
604 aa
AA seq
DB search
MSTTDVQLTAGSCERLQFANPQDASVFESPHTIQFLSIKKVNTANPNSNAPVDRYRIIIS
DGVHFIQAMLATQLNELVQNNSIGKHTVAVVERATCNYVQEKRLIVVLELRVVAHLPDKI
GDPQQLGPDSKRALDSASVTPAPQSVATSGPSTSTKTAPAKPATTGPQRGVYPIEGLSPY
QNNWTIKARVTQKSEMKQWSNAQGEGKLFNVTFMDDSGEIRATAFNLVADDLYPKLEEGK
VYYVSKARVGLAKKKFSNIPNDYELSLERNTEIEECHETTNLPTIKYNFVPLNGLDALAK
DAICDVIGVVKDVGEVGTITSRSNNRQISKRDLTLVDKSAYSVRMTLWGKQAEQFKVEPE
SIIAFKGVRVGDFNGRNLSMTSASTMQVNPDIEECFTLRGWYDSQGQTQTFQAQSSNNLG
GTSLGFRRDEARTLEDVKQAGFGQSDKPDYFSTRATIIHIKDDNIAYPACPTQGCNKKVI
EEADGWRCEKCEKVFEAPEYRYIMSMMVADHTGKAWFQGFNEVGVTVYGMSANDLVQIKN
NDHAQYKAIQYHAACNTYNFSCRAKEDEFNGVRRVRFGISRLAKVDYKEEAGYLRDLLYS
SWAR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgaccgacgtgcaactcaccgctggaagctgcgagcgtctccagtttgcgaac
ccacaagacgcgtctgtctttgaatccccgcacacaatccaattcctatcaattaagaag
gtcaacacggccaatcctaacagtaacgcccccgtggaccgatatcgaatcatcatctca
gacggtgtccatttcattcaagcgatgctcgcgactcagctcaacgagctagtccagaac
aacagcatcggaaaacacacagttgctgtggtggagagagccacctgcaactacgtccag
gagaaacgattgattgttgtgcttgaactccgcgtcgttgcccatctccctgacaagatt
ggagatcctcagcagcttggaccagatagcaaaagagcattggacagcgcatcggtcacc
ccagcgcctcaatccgtggcaacttctggcccgtcaacatctaccaagactgctcccgca
aagcctgccaccacaggccctcagcgcggtgtctaccccatcgagggtctcagcccttac
cagaacaactggactatcaaagctcgagtcacgcaaaagtcagaaatgaaacaatggtcc
aatgcacagggagagggcaagttattcaatgtgaccttcatggatgactcgggcgaaatc
cgggcaaccgcattcaaccttgttgccgatgatctttaccccaagttggaagaagggaag
gtttattacgtttccaaagctcgtgtggggttggcgaaaaagaagttttccaacattcca
aatgactacgaactcagtttggaaaggaacactgaaatcgaagagtgtcatgaaaccacc
aatttgcccacgatcaagtataattttgtccctctgaacgggcttgatgctctcgcaaag
gacgccatttgtgatgtcattggcgtcgtaaaggatgtcggagaagtgggtaccatcact
tcgaggtccaacaatcgacaaatctccaaacgggacttgacgctggtggacaagagtgcc
tattcagttcgcatgactctttggggcaagcaagctgagcaattcaaagttgaacccgag
tccattatcgcttttaaaggagttcgagttggtgatttcaatggccgcaacctatcaatg
acgagtgctagtactatgcaggttaatcccgatatcgaggagtgcttcactctaaggggt
tggtatgatagccagggccagacccagactttccaggcccaatcttcgaataaccttgga
ggcacctcccttggcttcaggcgggacgaagcacggactcttgaagacgtcaagcaggct
ggatttggtcagagcgataagcctgactacttttctacgagagccaccattatccacatc
aaggacgacaacattgcctaccctgcttgtcccactcaaggatgtaacaaaaaggttata
gaggaggccgatgggtggcgttgtgagaaatgcgagaaagtgttcgaggcgcccgagtat
cgctacattatgtccatgatggtcgcagaccatacaggcaaagcctggttccaaggattc
aacgaagttggtgtaactgtctacggaatgtccgcgaacgacctcgtccagattaagaat
aacgaccatgcacaatacaaggcaattcaataccatgctgcatgcaacacgtacaacttc
tcttgtcgagctaaagaagacgaattcaatggtgttcgccgggtcagatttggtatctct
cgtctggccaaggtcgattacaaggaagaagctggttatttgcgcgaccttttgtattcg
tcgtgggctcgctag
DBGET
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