Coprinopsis cinerea (gray shag): CC1G_01385
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Entry
CC1G_01385 CDS
T01275
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CC1G_01385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cci03019
]
CC1G_01385
Messenger RNA biogenesis [BR:
cci03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CC1G_01385
U7-dependent histone pre-mRNA processing factors
CC1G_01385
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Nha1_C
Motif
Other DBs
NCBI-GeneID:
6014029
NCBI-ProteinID:
XP_001837473
UniProt:
A8NYN1
LinkDB
All DBs
Position
5
AA seq
926 aa
AA seq
DB search
MITFTPLAGSAKSKSTTPLSYVLQVDDVRILLDCGSPDWVQEPSPFQDGADMEDDSNVKS
TSPPWQAYCEAMKKVAPTIDLVLLSHGDLAHCGLYPWAYSRWGLTAPAYTTLPVQAMGRI
AVTEDIEGIRGEIEVDIEEPVEEDAQKQDGGLEVEEQEKALPTMGAKGMCVATLIEVHNA
FDSINTLRYSQPIHLQGKCQGLTITPFNAGHSIGGTIWKIRSPSSGTILYAVNLNHMKER
HLDGTVMMVRPGGSGVFESLVRPDLLITDAERASVITSRRKDRDAALIDTITATLTSRSS
LLLPCDSSTRILELLVLLDQHWNYSRLTYPICLLSRTGREMLTFVRSMMEWLGGTISKED
VGEEGNKRQDRNKRRRDDEDGVEEALGALALRFKHLEFFPNPQALLQRHSSKDPKLILAV
PASLSHGPSRQLFADFAAVPDNVVLLTTRGAEGTLGRALFDKWNNSQRGDDKWDKGRIGR
NVMMDGAIKIKMYHKVPLQGAELEEYLAKERAAKEKEAAQQAAMARNQRMLEADEDDSDS
ESDSDSDADDEEEVREALGGDMDVDEAGNRRRRRGMKKSSDGADWGDGDEGYTKQLLSFD
IYLKGKVSKSTSFFKSVGGQTQRFRMFPYVEKKRRVDEYGETVDVGLWLRKGKALEEEAE
KKEKMEEGATIEEEDKIAEPPSKYVTSEVEVQLACRLLFIDMEGLNDGRAVKTIVPQVNP
RRMIVVHASEEATNALIESCGSIKAMTKDILAPVVNESIQIGQQINNFSISISDEMLASL
RMSRFEDNEIGYVRGRVVMHSNSIIPILEPASSAFPSSQTPTTKQVLNKRKLGSRPQVAL
PHSTMIGELKLTALKARLAKVGIQAELVGEGVLICGAGVGSLDNLAETVAVRKVASGRVE
LEGNVSDVYYTVRKEIYQLHALVAAA
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgatcacctttacacctctcgcaggctctgcaaagtcaaaatcgactacacctctttcc
tacgtcctccaggtcgacgatgttaggattttgcttgactgcggctccccagactgggtg
caggaaccgtcaccgttccaggatggcgctgacatggaggacgattcgaatgtgaagagc
acgagcccaccatggcaagcgtattgcgaggcaatgaaaaaagttgcaccgactattgac
cttgtacttctctctcatggcgacctcgctcattgtggattgtatccttgggcctattca
agatggggtttgactgcgccagcctatactacgcttccagttcaagctatgggtcgcatc
gctgtgactgaagatatcgaaggcattcgtggtgaaattgaagtcgatattgaagagcct
gttgaggaagacgcgcagaagcaggacggtggtttggaagtcgaagaacaggaaaaggca
ctgccgacgatgggtgccaaagggatgtgtgttgcaacactgatagaggttcataacgcg
ttcgattctatcaatacgctgcgttattcgcagcctatccatctacaaggaaaatgccag
ggcctgactatcacacctttcaacgctggtcactcgatcggtggtacaatatggaagatt
cgttctccatcgtctggcactattctctacgccgtgaatctgaaccacatgaaggagcgg
catttggatgggacggttatgatggtacggcctggcggcagtggggtgttcgagtcactt
gtacggcccgatttgctaatcacggacgccgaacgagcctctgtcatcacgagtagaagg
aaggatcgcgacgctgccctcattgatacaattactgccactctaacttcgagatcttcc
ttgctcctcccatgcgactcgagcacacgtatcctcgaactccttgtccttcttgaccaa
cattggaattactctcgcctcacgtacccaatatgcctcctctcccgaacaggtcgagaa
atgttgacctttgtccgaagtatgatggaatggctgggcggcacgatcagcaaagaagac
gtaggggaggaagggaataagcgtcaagataggaacaagcggcgaagagacgatgaagac
ggggtcgaagaggcccttggggcattggctcttcgcttcaaacacctcgagttcttcccg
aatccacaggcgctgttgcagagacattcgtcaaaggatccgaagctgatccttgcggtc
cccgcttccctttcgcatggcccttcgagacagctgtttgcggattttgctgcagttcct
gacaatgtcgtcttgttgacaactcggggggctgagggtacactgggtcgtgcgctattc
gacaagtggaacaactcgcaacggggagatgataagtgggacaaggggaggattgggcgg
aatgtcatgatggacggggctatcaagattaagatgtaccacaaagtgcctcttcaaggg
gccgaactggaggaatacctcgcaaaagaacgcgccgcaaaagaaaaagaagcagcccag
caagcagctatggcccggaatcagcgaatgttggaagccgacgaagacgacagtgactct
gaatccgactctgattctgacgccgacgacgaagaggaggtgcgggaggcgttgggtggt
gacatggacgtggatgaggcgggaaatcggagacgtcggagaggcatgaaaaagtcttct
gacggggcagactggggggatggcgatgaggggtacacaaaacaattgctttcatttgac
atttatttgaagggcaaagtctcaaaatcgacgtctttctttaagagtgtcggagggcaa
acgcagaggttcaggatgttcccgtatgtggagaagaagaggagagtggacgagtatggt
gagactgttgacgtcggattgtggttgcggaagggaaaggcgctggaggaggaggccgag
aagaaggagaagatggaggagggagctaccatcgaggaggaagacaaaatcgccgaacct
ccctcaaaatatgttacgagcgaggtcgaagttcaattggcctgtcgactgttgttcatt
gatatggaaggtctcaacgatggtcgtgctgtcaagaccatcgtaccccaagtcaaccct
cgaaggatgatcgtggttcatgcttcagaagaggctaccaatgctcttatcgagagctgt
ggcagtatcaaagctatgaccaaggatatccttgctccggtggttaacgaatcgatacaa
attggtcagcaaatcaacaatttctcgatatccatcagcgatgaaatgttggcttctttg
cggatgtcgaggttcgaagataacgagattggctatgtcagaggacgggtggtcatgcac
tccaactcaatcattcccatcctcgaacccgcgtcctcggccttcccgtcttctcaaacc
ccaacgaccaagcaagtcctcaacaaacgcaaacttggatcgcggcctcaagtcgcgctc
ccccactcgaccatgatcggagaactgaaacttacagctctcaaagcgcgtctggccaag
gtgggcatccaagcggaactggttggagagggtgttttgatttgcggtgctggagtgggc
tcgttggacaacttggctgagacagtagcggtaaggaaggtagcgagtgggagggtagag
ttggagggcaacgtgtcggacgtgtattataccgttaggaaggagatttatcaactgcat
gccttggttgctgctgcttag
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