Coprinopsis cinerea (gray shag): CC1G_02978
Help
Entry
CC1G_02978 CDS
T01275
Name
(RefSeq) pre-mRNA splicing factor
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC1G_02978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cci03041
]
CC1G_02978
Enzymes [BR:
cci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CC1G_02978
Spliceosome [BR:
cci03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CC1G_02978
Complex C
U4/U6.U5 tri-SnRNP related factors
CC1G_02978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Motif
Other DBs
NCBI-GeneID:
6012425
NCBI-ProteinID:
XP_001835890
UniProt:
A8NRY7
LinkDB
All DBs
Position
8
AA seq
1090 aa
AA seq
DB search
MECFENASEAFLQLSSTPHHEFGLNGIVGPLFGLADRSIIDFIIAAAKSAKSAESLFASL
NASGLPDSPDAHQFVNELYSKVPRRSKKSAADAARKQAEKEAKALRSQKYGLLLEDEDQS
IEILKEKPRESSKSKRDKQIRKRDYDGKEWESDEEEKARKRWKGDEEGERRDEDADMDGE
PAEEIDEEALKEQQRLEDIRERDAFAERMKERDKQKTKKVVEDRSSRNAGATSEAALRRQ
LADDAEARSQALPSLRLHSRQEYLTKREIQQIELLRKEIADDEALFAGMKITKRERRELE
QKKELLRLVEERLKINDKWEGYQLPEDYLTEQGKIDKKKKENALYRRYEEAKPKDDQFVT
DVDQWEAAQTRNSTFKTGAMDKQEAVDNYEYVFDESQTIQFVMESQLPGTRMSEADRLLQ
QQIEEAEKRAKTIEETRKSLPIYAYKEQLIEAVKEHQVLIVVAETGSGKTTQLPQYLHEA
GYTANGGKIGCTQPRRVAAMSVAARVAEEMGTKVGYEVGYSIRFEDCTSDKTVVKYMTDG
MLLREFLTEPDLAGYSCLIIDEAHERTLSTDILFALVKDIARFRPELRLLISSATMDAEK
FSEYFDDAPTFYVPGRMYPVDIHYTPQPEANYLHAAITTVFQIHTTQPKGDILVFLTGQE
EIEACHENLQETARALGNKIKELIICPIYANLPSEMQAKIFEPTPEGARKVVLATNIAET
SITIDGVVFVIDPGFVKQNSYNPRTGMSSLVVVPCSRASANQRAGRAGRVGPGKAFRLYT
KWAFSNELEANTVPEIQRTNLGMVVLLLKSLGINDLIGFEFLDPPPGETLMRALELLYAL
GALNDRGELTKLGRRMAEFPVDPMLSKSIIASEKYQCTDEVLTIIAMLSESGSLFYRPKD
KKLHADQARQNFVRPGGDHFTLLNVWEQWAETNYSQQFCYEQFLQFKSISRARDIRDQLA
GLCERVEIVIEQNPNTNDISPIQKAITAGYFYNTAQLQKSGDSYRTLKTNHTVYIHPSSS
LFQHQPPVKAVLYYELVMTSKSYMRQVMEIKPAWLLEVAPHYFKPTDLEQMAKGDKKMPK
TIGASSSQAP
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggaatgctttgagaacgcctcggaggcttttcttcaactctcatctactccccaccac
gaatttggtttgaatggcatcgttggacctttgtttggacttgcagatcgaagtatcata
gacttcattattgccgcagcaaagtcagctaaatctgcggaaagccttttcgcctccctc
aacgcttccggtttaccagactcacccgacgcacaccaattcgtcaacgaactatactct
aaagtcccgcgcaggagcaagaagtctgccgcagacgctgcccgcaagcaagcggagaag
gaggcgaaagcgttgaggtcacaaaagtatggactcttgttggaagacgaagaccagtcg
atagagattctgaaggagaagccgagggagtcatccaagagcaaacgtgacaaacaaata
cggaagcgggattatgatggaaaggaatgggagagcgacgaggaggaaaaggcgcggaaa
cggtggaaaggggacgaggaaggggagcggcgcgacgaggatgctgacatggacggtgaa
cctgcggaggagatcgacgaagaggcgctgaaggaacaacagcgcttagaggacattcga
gaacgtgacgctttcgccgaacgaatgaaggagcgcgacaagcagaagacgaagaaggtc
gttgaggaccggtcatccaggaacgccggtgctacttcagaggctgccctgcgacgacaa
ctcgccgacgacgcagaagcccgtagccaggcccttccctccctacggctgcattcacgt
caagaatatctcaccaagcgtgaaattcaacaaatcgagctgcttcgtaaagaaatcgcg
gacgatgaagccctgttcgcgggcatgaagatcacgaagcgggagaggcgtgaactggag
cagaagaaggaactgttgagattggtggaggagcggctcaagattaacgacaagtgggaa
ggttatcaattgccggaggattatctgacagaacagggcaaaatcgacaagaagaagaaa
gagaatgccctgtatcgccgctatgaagaagccaaaccaaaggacgaccaattcgttacc
gatgtcgaccagtgggaggcggctcagacgaggaacagtactttcaaaacgggtgccatg
gacaagcaggaagctgttgacaactacgaatatgtttttgacgaaagtcagactatccag
ttcgtcatggagtcgcagctaccggggacgagaatgtcagaggcagaccgtttgctccag
cagcaaattgaagaggctgagaagagagctaaaacaatcgaggaaactcgaaagtcactc
cccatctacgcgtacaaggagcaacttatcgaagcagtgaaagagcaccaggttctcatc
gtcgtcgccgaaacgggctcaggcaagaccacgcagttgccacaatacctccatgaagcg
ggttacactgctaacggaggcaagattggatgtacccaaccccgtcgagttgcagcaatg
tctgtcgcagcccgtgtcgcagaggaaatgggcaccaaagttggttacgaagtgggctac
tcgatacgattcgaagactgtacaagcgacaagacggtcgtcaagtacatgaccgacgga
atgttacttcgggagttcttaacagaaccagatttggcggggtactcatgcctcatcatt
gacgaagctcacgaacgaacgctcagtacggatatcctttttgctcttgtcaaggatatt
gcgcgtttcaggcctgaattgcggcttttgatttccagtgcgactatggacgcagagaag
tttagcgagtacttcgatgatgctcctacattctatgtacccggccgcatgtaccctgtc
gacatccactacacccctcaacccgaggcaaattacctccacgccgccatcaccaccgtc
ttccagatccacacgacacaacccaagggcgatatcctggtgttcttaacgggtcaagaa
gagatcgaggcgtgtcacgagaacttacaagaaacagctcgggccctgggcaataaaatc
aaggaactcattatatgtccgatctacgccaacctgccgagtgaaatgcaggctaagatt
ttcgagccgacaccagaaggggcgcggaaagtggtcctggccaccaacattgccgaaacg
tctatcacgattgacggagttgtcttcgttattgatcctgggtttgtgaaacaaaactct
tacaaccctcggacgggaatgtcctcgctggttgtggttccctgttcacgagcttctgcc
aatcaacgtgccgggcgtgcaggtcgtgtcggtccaggaaaagcattccggttgtacacc
aagtgggcgttctccaatgagctagaagccaacacggtccccgaaattcagcggacaaat
ctgggaatggtcgtcctactgctcaagtcattgggtatcaacgatttgatcggattcgaa
ttcctagaccctccaccgggcgagacgctcatgagagcactcgaacttctctatgccctc
ggtgccctcaacgaccgcggtgaactcaccaagctgggccggcgaatggctgaattcccc
gttgatcctatgctgtcgaagtccatcattgccagcgagaaataccagtgtacagacgag
gtcctcaccatcatcgccatgctgtctgaatcaggatcgctcttctaccgtccaaaggat
aagaagcttcacgccgaccaagctcgacaaaactttgtgcgacccggtggtgaccatttc
acacttctgaatgtctgggaacaatgggccgaaaccaactattctcaacaattctgttac
gaacaattcttgcagttcaagagtatcagtcgcgctcgcgatatccgcgaccagttggct
ggcctctgtgaacgggtcgagattgtgatcgagcaaaacccaaacaccaacgatatcagc
ccaatacaaaaggccataacggcgggatatttttataacacggctcaattgcaaaagagc
ggggactcgtatcggacgttgaagacaaatcacacagtgtacatccatccttcatcaagc
ttattccagcatcaacctcccgtaaaggccgtcctttactacgaattggtcatgacgtcc
aagtcttacatgcggcaagtgatggaaatcaagcctgcttggctactcgaagtcgccccg
cattacttcaaacccaccgatctggaacaaatggccaagggcgacaagaaaatgcccaaa
acgattggtgcctccagttcccaagcaccatga
DBGET
integrated database retrieval system
