Coprinopsis cinerea (gray shag): CC1G_03293
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Entry
CC1G_03293 CDS
T01275
Name
(RefSeq) mRNA 3'-end-processing protein YSH1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CC1G_03293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cci03021
]
CC1G_03293
03019 Messenger RNA biogenesis [BR:
cci03019
]
CC1G_03293
Transcription machinery [BR:
cci03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CC1G_03293
Messenger RNA biogenesis [BR:
cci03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CC1G_03293
U7-dependent histone pre-mRNA processing factors
CC1G_03293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
6007201
NCBI-ProteinID:
XP_001830756
UniProt:
A8N7F0
LinkDB
All DBs
Position
3
AA seq
846 aa
AA seq
DB search
MADSQSLKVTMLGAGQEVGRSCCVLQYRGKTVVCDTGVHPAYSGMASLPFIDDLDWSTVD
AILVTHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDFARMSSSTSDALF
SPLDMQMSLASIIPVSAHQLINVCPGVSFTPYHAGHVLGACMFLIDIAGLKILYTGDYSR
EEDRHLVKAELPPIRPDVLIVESTYGVHTLEGREEKEARFTTLVHSIIRRGGHVLLPAFA
LGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANIRTRFAKRDN
PFVFKYISNLPQTRGWEKKIAEGPPCVVLASPGFMQVGPSRELFELWAPDARNGLIITGY
SIEGTLARDIMTEPEDFIGLKGNTIPRKISVDYISFSAHVDYAQNSEFIQAVKAQHVVLV
HGEQNTMGRLRAAMAAKFKERDEDVKIHTPRNLETLELSFRGERVAKAIGTLADKPPQAN
DVLSGLLVAKDYSYTLLDPRDLKDFTGLSTCVVTQRQKLVISVGWDLVRWHLEGMYGKVE
EGLDKDGVLTMRVMGVLDVKHTGEHELTLEWDSSASNDMIADSTLALITGIDKSPASVKL
TTHPHSHSHSHHQHPHADLEGESSSVTRIQRLAMFLEAHFGEVELHYPDEETEQRDNAEE
DEEEEEEEREPALLVRLDEAFAQINLLSLTVSSPNEALRKRVEAVLDMALTTVSSLTESF
TSGVPVTIDSDVAGSKGKDDKALSMVGPASADGAGGDKSRGSGNEDVDMGDKPTEEGDSN
KNAGDEGGSKIAEGQSEAGADGDAGAVADHVAVPQDESSAKGEVSGDGDGDHGASGTTKA
AEGDGV
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggccgactcacagagtctgaaggttactatgttgggagcgggccaggaagtcggacgg
tcgtgctgcgttctacaataccgggggaagaccgtcgtctgcgatactggcgtacaccca
gcgtacagcggaatggcctcattgcctttcattgacgacctcgactggagtacggtcgat
gccattctcgtgacccatttccacttggaccatgctgcagcgctcacttatatcactgaa
aaaaccaactttcgcgatgggaagggcaaggtttacatgacccatccaacaaaagcagtc
cacaaattcatgatgcaagattttgctcgaatgagctcctcgacttccgacgcgcttttc
tctccattagacatgcaaatgtcactcgcctcaatcatccccgtttccgcccaccaactc
atcaatgtttgccctggtgtcagctttacaccgtaccatgctggtcacgtccttggagcc
tgtatgttcctgattgacattgctggccttaaaatcctctacactggtgactactcccga
gaagaggaccgacatcttgtgaaggcagagcttccacctatccgtccagacgtcctcatt
gtcgagagtacatacggtgtacatactctcgaaggtcgtgaagagaaagaggcccgcttt
acgacactcgttcactcgatcatccggcgtggtggacatgttcttctccctgctttcgct
ctcggtcgtgctcaggaactcttgctcatcctggacgagtactggaagaaacatcctgac
cttcacaacgttcccatttactatgcgtctagcttggctcggaagtgtatggcggtctac
caaacctatattcatacaatgaatgccaacattcgaacacggttcgcaaagcgtgacaat
cccttcgtcttcaagtacatctctaaccttcctcaaacccgaggatgggaaaagaagatt
gcggaaggacctccttgcgtggtacttgcaagtcctggcttcatgcaagttggtccaagc
cgtgaacttttcgaattatgggccccggacgctcgcaatggactcatcatcactggctac
tcgattgaaggaacgcttgctagggacatcatgactgaaccagaagactttatcggcctg
aaaggcaacacgattccacgaaagatatctgtggactacatctccttcagcgcccatgtc
gactatgctcagaattcagaatttattcaagcggtgaaggctcaacacgtcgttttggtt
catggagagcaaaacacgatggggcgtttgcgcgccgctatggcggccaaattcaaagaa
cgggatgaagatgtgaagattcatacaccgcgtaacttggagaccctggaactctcgttc
cgaggagagcgagttgccaaggctattggaactctcgctgacaagcctcctcaagccaat
gacgtcttatccggccttttggtggcaaaagactattcctataccctccttgatccccga
gaccttaaagacttcactggtctgtcgacttgcgttgtgacgcagcggcagaagctggta
ataagcgtcggctgggatctggtgcggtggcacctggagggtatgtatggcaaggtggaa
gagggtctcgataaggatggtgtcttgactatgcgggttatgggagtgctcgatgtgaag
cacacaggagaacacgaactgacactcgaatgggactcgagcgcgagtaacgatatgatc
gcagattcgacattggcgttaattaccggtattgataagagtcctgcctcggtgaaattg
accacccacccccactcgcattcacacagccaccaccaacaccctcatgccgaccttgag
ggagaatcatcctccgttacacggatccagcgactagccatgttcctcgaggcccacttt
ggcgaagttgaacttcattatccagatgaggaaacagagcaacgagacaacgccgaagaa
gacgaggaagaagaagaagaagaacgagaacctgcgctgctagtccgcctagacgaggca
tttgctcaaattaatctcttgtctttgaccgtgtcgagtcccaacgaagcactacggaaa
cgcgtcgaagcagttctcgatatggccttgacgaccgtaagctctttaacggagtctttc
acctctggggtccccgttacaatcgactcggatgttgcggggtccaagggcaaggacgat
aaggcgctttcgatggtcgggcccgcaagcgctgatggcgccggtggtgacaaaagtcgt
ggttctggcaatgaggacgttgatatgggtgataagccaacggaagagggcgattccaac
aagaatgctggtgatgagggagggtctaaaatagctgagggacagtctgaggctggagct
gatggagatgctggcgcagtggctgatcatgttgctgtaccccaggacgaatcatcagct
aaaggtgaggtgagcggtgatggagatggagatcatggtgcttccgggacgaccaaggct
gcagaaggagacggtgtatga
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