Coprinopsis cinerea (gray shag): CC1G_03770
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Entry
CC1G_03770 CDS
T01275
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03013
Nucleocytoplasmic transport
cci03015
mRNA surveillance pathway
cci03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC1G_03770
09122 Translation
03013 Nucleocytoplasmic transport
CC1G_03770
03015 mRNA surveillance pathway
CC1G_03770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cci03019
]
CC1G_03770
03041 Spliceosome [BR:
cci03041
]
CC1G_03770
Enzymes [BR:
cci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CC1G_03770
Messenger RNA biogenesis [BR:
cci03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CC1G_03770
Spliceosome [BR:
cci03041
]
Complex C
Other components
EJC/TREX
CC1G_03770
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CC1G_03770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
6005402
NCBI-ProteinID:
XP_001828976
UniProt:
A8N263
LinkDB
All DBs
Position
1
AA seq
432 aa
AA seq
DB search
MSAQDAEDLIDYEDEHDIVPSGGAAASAGAAGGAGDAGDKKNFSGIHSTGFRDFLLKPEL
LRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSV
LVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKTKCPHIVVATPG
RLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHHKQVMMFSATLAKE
IRATCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAGKNRKLNELLDNLEFNQVVIFV
KSVARAIELDKLLVSCNFPSIAIHSGLQQEERIKRYTAFKAFEKRILVATDIFGRGIDVE
RVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSDTDQQTMASIQSRFEVAVPEL
PDHIDPASYMTS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcacaagacgccgaagatcttatcgactacgaggacgagcacgacattgtccca
agcggtggtgcagcagcctcggcaggcgctgctggaggtgctggcgacgcaggggataag
aaaaacttttctggtattcactcaaccggtttcagggatttcctcttgaaacccgaactg
cttcgtgccatttctgatctgggctttgaacatccttcggaagtgcaacaagaatgtatt
ccccaggccgttcttggtatggacgttctgtgtcaagccaagtccggtcacggaaagact
gcagtcttcgttcttgccactctccaacaacttgagcctgtcaatggcgaagtgtcggta
ctcgttctctgccatactcgagagttggcattccaaatcaaaaacgaatacacgcgtttc
gccaaatacatgccggatgttcgcgtcagcaccttctatggaggaactccagtcgcaaag
gatgccgaaatcctgcgcgataaaaccaaatgcccccacattgtcgttgctactcccggt
cgactcaacgccctcgcccgcgacaaagttttggacgccaagaacgtgaagcatttcgtg
ttggacgagtgcgacaaaatgcttgaacagctcgacatgcgccgcgacgtccaggaaatc
ttccgcatgacccctcaccacaagcaagtcatgatgttcagcgccacccttgcgaaggaa
atccgagcgacgtgcaagaagtttatggccaatccccttgaaatcttcgtcgacgatgaa
accaagttgaccctgcacggtttacaacagcactacgtgaagctggaggaagctggaaag
aacaggaagttaaacgaattgctcgacaacctcgaattcaaccaggttgtcattttcgtg
aagtcggttgctcgtgcaattgaactggataagctgcttgtgtcctgtaacttcccttca
atcgccatccactctggattgcagcaagaagaacgtatcaaacgttatactgcttttaag
gctttcgagaagcgtatcctggttgccactgatatcttcggtcgtggtattgatgttgaa
cgagttaacatcgttgtcaattatgattgccctcccgatgccgattcctatcttcaccgc
gttggtcgtgccggccgcttcggtaccaagggtttggcgatcaccttcgtgtcttcggat
acggaccagcaaaccatggcgtccatccaatcccgtttcgaggttgctgttcccgagctt
ccggaccatatcgaccctgccagttacatgacctcttaa
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