KEGG   Coprinopsis cinerea (gray shag): CC1G_04557
Entry
CC1G_04557        CDS       T01275                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
cci  Coprinopsis cinerea (gray shag)
Pathway
cci03040  Spliceosome
cci04139  Mitophagy - yeast
Brite
KEGG Orthology (KO) [BR:cci00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CC1G_04557
 09140 Cellular Processes
  09141 Transport and catabolism
   04139 Mitophagy - yeast
    CC1G_04557
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cci03019]
    CC1G_04557
   03041 Spliceosome [BR:cci03041]
    CC1G_04557
   03032 DNA replication proteins [BR:cci03032]
    CC1G_04557
Messenger RNA biogenesis [BR:cci03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     CC1G_04557
Spliceosome [BR:cci03041]
 Complex A
  U1 snRNP components
   Sm proteins
    CC1G_04557
  U2 snRNP components
    CC1G_04557
 Complex B
  U1 snRNP components
    CC1G_04557
  U4/U6.U5 tri-snRNP components
    CC1G_04557
 Complex C
  U2 snRNP components
    CC1G_04557
DNA replication proteins [BR:cci03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     CC1G_04557
SSDB
Motif
Pfam: LSM SM-ATX E3_binding LSM14
Other DBs
NCBI-GeneID: 6006562
NCBI-ProteinID: XP_001830124
UniProt: A8N5H9
LinkDB
Position
3
AA seq 126 aa
MATSGLGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQ
LDQVYIRGSMIRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTARGRATIMRARRGRGVAPA
PRGIRR
NT seq 381 nt   +upstreamnt  +downstreamnt
atggccacctcaggacttggagttcccgtcaagcttttgcatgaatctttgggacatatt
atcactgttgagttgaagacggggcagctttatcgtggaaagttggctgaagccgaagac
aacctcaacatctcgctaaaagacataactgtcactggacgtgatgggcgagtttctcag
ttggatcaagtgtacattcgggggagtatgattcggttctttatcgtgcctgatatgctg
cagaatgcgcctatgttcaagcgagttggacccaatgctatgaggggaaggggtattggt
acggcgcgtggtcgcgcgaccattatgcgagcacggagaggaaggggtgttgcaccggct
cctcgaggaatccgacgatga

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