Coprinopsis cinerea (gray shag): CC1G_04648
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Entry
CC1G_04648 CDS
T01275
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03018
RNA degradation
cci03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC1G_04648
09123 Folding, sorting and degradation
03018 RNA degradation
CC1G_04648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cci03019
]
CC1G_04648
03041 Spliceosome [BR:
cci03041
]
CC1G_04648
Messenger RNA biogenesis [BR:
cci03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CC1G_04648
mRNA degradation factors
5'-3' decay
Lsm complex
CC1G_04648
Spliceosome [BR:
cci03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CC1G_04648
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
6006398
NCBI-ProteinID:
XP_001829959
UniProt:
A8N541
LinkDB
All DBs
Position
3
AA seq
129 aa
AA seq
DB search
MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECY
IRGSTIKYLRVPDQLLDAVKEEQNRAREANRGARGAPGGRGGRGMQQRGRGGRGGPVRGT
PGRGRGRGA
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgctgccactatctctgctaaatgcagcccagaataagcctatgctggtagagctgaaa
aacggggaaactttcaatggacatctagtaaactgcgacaactttatgaatatcacactg
cgagaagtctaccagacgagtgcagagggagataggttctggaaattgaaggaatgctat
attcgaggcagcacaataaagtatcttcgcgtccccgaccaacttttggatgcagtgaag
gaggaacagaaccgcgcacgagaagcgaatagaggcgctcgaggggcgcctggcggaaga
ggaggccgtggaatgcaacaacgaggacgaggaggcagaggaggaccggtccggggtact
cctgggcgaggaagaggacggggagcataa
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