Coprinopsis cinerea: CC1G_06213
Help
Entry
CC1G_06213 CDS
T01275
Name
(RefSeq) ATP-dependent RNA helicase Prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cci
Coprinopsis cinerea
Pathway
cci03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC1G_06213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cci03041
]
CC1G_06213
03009 Ribosome biogenesis [BR:
cci03009
]
CC1G_06213
Enzymes [BR:
cci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CC1G_06213
Spliceosome [BR:
cci03041
]
Complex A
U2 snRNP components
U2 related factors
CC1G_06213
Complex B
CC1G_06213
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CC1G_06213
Ribosome biogenesis [BR:
cci03009
]
Eukaryotic type
90S particles
Helicases
CC1G_06213
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
AAA_30
ABC_tran
AAA_14
AAA_7
T2SSE
nSTAND3
NB-ARC
Motif
Other DBs
NCBI-GeneID:
6013172
NCBI-ProteinID:
XP_001836626
UniProt:
A8NV89
LinkDB
All DBs
Position
4
AA seq
704 aa
AA seq
DB search
MRKSQKAQPSPMFSGFQRRNVNAEQVRAALFNANQIMILVGETGCGKTTQIPQFIAYTDL
PHLHGKVVGCTQPRRVAAMSVAQRVAEEMDVKLGKQVGYAIRFEDVTEPGTTFLKYMTDG
LLLREAMTDPDLRKYSTIILDEAHERTLSTDILMSLLKTLAHRRRDLKIVIMSATLDAAK
FQRYFSTVDGKVGAINVPILKVRGRTFPVEVFYTPEPEPDYFDAAIRTALMIHRAEGPGD
ILVFLTGEEEIEDACRTIQNEVDEINNEHPGTMNPVLCIPLYSSLPPQQQQRVFQPTQRL
ANGAFIRKIVISTNIAETSLTIDGIVYVIDPGFSKQKIFHPRARLESLIVSPISKASAHQ
RAGRAGRTQPGKCFRIYTEADFQAQLTEQNPPEISRSSLADVVLELAKLGIKNVATFDYM
DPPAPETLMRALESLHYLGALDEQGNITPLGSMMAEYPLDPQMAKTLIVSPNYGCSDEIL
TIVAMLSVPPVFSRPFNRRYEADKAKAALTVPEGDHMTLLNVYNLYQQNKWNQQWTWTNY
LSARALKQAENVRAQLKRIMERHGLKVVSGTAEGKDPNRLSESIEKALISGFFAQVAYRD
ERGTYLTVKDNQPAGLHPACGFKGHRPEWVLYNDCVVLTDTNYLSTVTEIEPELSVWFLG
SRLVAHADMLVFTVLASSKSRQIITTFRRTRIPRASVHCKRWQP
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaatcgcagaaagctcagccttctcccatgttctcagggttccagagacgcaat
gtcaacgctgagcaagtcagagcagccctgttcaacgcgaaccagatcatgattcttgtg
ggagagacgggctgcggaaagacaacacagattccgcaattcattgcctacactgacctt
ccccatcttcatggcaaagtggttgggtgcacccaaccccgtcgggtagcagccatgtct
gtggcccagcgagtcgcagaggagatggacgtgaagctaggcaagcaagtcggctacgcg
atcaggttcgaagatgttacagaacccgggacgacattcctcaaatacatgacggacggc
cttttgctgcgagaggcaatgacggaccccgacctacgcaagtactccaccatcatcctg
gacgaagcacacgaacggacactatccaccgacatcttaatgagccttctcaaaacgctg
gcacaccggaggagagacctgaagatcgtcatcatgtccgcgaccctcgatgccgccaag
ttccagaggtatttttcgaccgtcgatggaaaggttggagctatcaatgtgcctatcctc
aaagttcgtggaaggacattcccggtcgaggtgttctatacgccagaaccagagccggac
tacttcgacgcagccatacggacagcattaatgattcaccgcgctgaaggtcctggggac
atcctcgtattcctcactggagaagaagagatcgaagacgcgtgtcgaacaatccagaac
gaagtcgacgaaatcaacaacgagcatccaggaaccatgaatcccgtcctctgtatcccg
ctctactcctctctaccgcctcaacagcagcaacgcgtatttcaacccacccaacgtcta
gccaacggagcattcattcgaaagatcgtcatcagcactaacatcgccgaaaccagtctg
acgattgacggtatcgtgtatgtcatcgaccctggtttctcgaagcagaagatcttccat
cccagagcaaggcttgaaagtcttatcgtcagtcctatcagcaaggcgagtgcacatcaa
agggcaggaagagctgggagaacccaacccgggaaatgctttaggatttatacagaagcg
gacttccaggcacagttgacggaacagaatccaccggagatctcgaggtcgagtttggcg
gatgtcgtattggaacttgcgaaattaggaatcaagaacgtggccactttcgactacatg
gatcctcctgccccagaaacgttgatgagagcattggagtcgttgcattaccttggggct
cttgacgagcagggtaacattacaccactgggctcaatgatggctgaatatccactggat
cctcagatggccaaaaccctcatcgtatctcccaactatgggtgcagcgacgaaatcctt
accattgtggccatgctgtctgttccccctgttttctctcggcctttcaacaggcgctat
gaagccgacaaagccaaagctgcgctcacagttcccgaaggcgaccacatgaccctcctg
aacgtctacaacctctaccaacagaacaaatggaaccagcaatggacatggaccaactac
ctctccgcacgcgcactcaagcaagcggaaaacgtacgggcccagctgaaacgcataatg
gaacgacacggcctcaaagtggtatccggaaccgcagaagggaaggaccccaatcgactt
tccgaatcgatcgagaaggctctgatcagcgggtttttcgcacaagttgcgtacagagat
gagcggggaacatacttgactgtgaaggacaaccagcctgccggtttacatcccgcgtgt
ggtttcaaaggtcatagacctgaatgggtgttgtacaatgattgcgtggtgttaaccgac
accaattatctctcaacagtgacagagatcgagccagaactgtcagtttggtttcttggt
tcccgtctcgttgcacacgctgatatgctcgtcttcaccgtgctagcctcctcgaaatcg
cgccagattattacgacctttcgacgtacccgaattccgcgagcaagcgtgcattgcaag
aggtggcagccatga
DBGET
integrated database retrieval system
