Coprinopsis cinerea (gray shag): CC1G_09925
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Entry
CC1G_09925 CDS
T01275
Name
(RefSeq) MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC1G_09925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cci03019
]
CC1G_09925
03041 Spliceosome [BR:
cci03041
]
CC1G_09925
03009 Ribosome biogenesis [BR:
cci03009
]
CC1G_09925
03016 Transfer RNA biogenesis [BR:
cci03016
]
CC1G_09925
Enzymes [BR:
cci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CC1G_09925
Messenger RNA biogenesis [BR:
cci03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CC1G_09925
Spliceosome [BR:
cci03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CC1G_09925
Complex C
U4/U6.U5 tri-SnRNP related factors
CC1G_09925
Ribosome biogenesis [BR:
cci03009
]
Eukaryotic type
Pre-60S particles
Helicases
CC1G_09925
Transfer RNA biogenesis [BR:
cci03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CC1G_09925
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
6011555
NCBI-ProteinID:
XP_001835034
UniProt:
A8NN16
LinkDB
All DBs
Position
12
AA seq
1059 aa
AA seq
DB search
MAIDAANDMDVDQQQNNAALKRKADVEDATTTSENGAAMDEDEDLNEPGPSSLKKPRLGS
PRPVVLDDFETEAKREVAASAGLTGAAETNSRLELRHQVRHQVAVPPGYDYTPISKHVPP
AKWDREYKFELDPFQRVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLNRKQRVIYTS
PIKALSNQKYREMLAEFGDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEIVREVAWV
IFDEIHYMRDAERGVVWEETLILLPHSVRYVFLSATIPNAMQFAEWICKSHDQPCHVVYT
DFRPTPLQHYLFPAGGEGIYLVVNEKGEFRDDNFAKAMGKIQENMADDPADPFAGKGRKG
KSKKGGEKKGPSDISKIIKMIMVKNYNPVIVFSFSKRECEGLALTLSKFEFTNQEEQDLI
ANIFENAIDNLSKEDRQLPQIVNLLPLLKRGIGFHHGGLLPILKEVIEILFQEGLIKVLF
ATETFSIGLNMPAKTVVFTATRKFDGKDFRNISGGEYIQMSGRAGRRGLDDRGVVIMMCD
EKLEPSAAKGMLKGVADRLDSAFHLGYNMILNLMKVEGISPEFMLERCFFQFQSSAAIPQ
LEDELKAEQEAHRKIVVPDEALVSQYYDLRQQLDQMGADFREIVTHPAYSLPFMKPGRLV
KVKHGKHDFGWGIVVNYQKRTPPRNRPGPSVDSLPPHEQYVIDVLLNLASTHSPSAKDRD
AMAATPDGIQPCPQGQKGAPQVVPVLLSTIDSISHLRIVLPKDLRQDQARETAWKSVLEV
QRRFPKGIALLDPVENMNIKDEKFKELVKKIAATEQKLFSSPLHKDPRLPELYTLFSQKK
ESLERISALKKRIQSTQDVLQMEELKCRKRVLRKLGFTTANDIVDVKGRVACEISSGDEL
LLTELIFNGAFNTLKPEQCAALLSCFVFGEKSDQQTKLTEELTAPLRVMQELARRIAKVS
KESLLTIDEDEYVSSFKVELMEAVVQWCRGASFSDICKLTDQLFEGSLIRVFRRLGELLR
QMAQAANVIGNEELKEKFETALEMLERPNSVIFCSSLYL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggccatcgacgcagccaacgacatggatgtcgaccaacaacaaaacaatgcggccttg
aaacgaaaagctgacgtcgaggatgcgacgacgacaagcgagaacggagcggcgatggac
gaagacgaggacttgaacgaacctggcccttcgtcgttgaagaagccaagattgggatct
cccagacctgtggttctcgatgattttgagacggaagctaagcgagaagttgcagctagc
gctggtcttacaggggctgcagagacgaactcgaggttggaactgaggcatcaggttcgc
caccaagtcgcagttccaccaggatacgactacactccgatttcaaaacacgttcctccg
gccaaatgggacagggaatataaattcgagctggatcctttccagagggtgtcggtctat
gcgattcagaggaacgagagtgttttggtttcggcgcatactagtgctggaaagacggtt
gttgcggagtatgcgattgcgcagtgtttgaataggaagcagagggttatctataccagt
cctatcaaggctttgagtaatcagaagtatcgagagatgcttgccgagtttggagatgtg
ggtcttatgactggagatgtgactatcaacccttcagcgagctgtctcgttatgactacc
gagattctccggtcaatgctctaccgcggttccgagatcgtgcgtgaagtcgcatgggtc
attttcgacgaaattcactacatgcgagacgcggagcgaggtgttgtttgggaggaaact
ctcattctgttgcctcatagtgttcgctacgtcttcctctccgccacgatacccaacgcc
atgcagttcgcggagtggatatgtaaatcccatgaccaaccttgtcacgtcgtttatacc
gacttccgacccacgccattgcagcactatctgttccccgctggaggagagggcatttac
ctggttgtgaacgagaagggggagtttagggacgataattttgccaaagctatgggcaag
attcaggagaatatggcagatgaccctgcagatccgtttgctgggaaggggaggaaaggg
aaatcgaaaaagggtggtgaaaagaaaggcccatccgacatttcaaaaatcattaaaatg
atcatggtcaaaaactacaaccctgttatcgttttctcgttcagtaaacgagaatgtgaa
ggcctcgcgcttacgctctcaaagttcgagtttacgaaccaggaagagcaagacctgatt
gctaacatcttcgaaaacgccatcgacaacctttccaaggaagaccggcagctccctcaa
atcgtcaacctcctcccacttttaaaacgcggaattggattccatcatggtggtcttcta
cccatcctgaaagaagtcatcgagattctcttccaagaaggtctcatcaaggtgctcttc
gccaccgaaaccttctccattggtcttaacatgcctgctaaaacggtcgtcttcactgcg
actcgcaagtttgacggaaaggacttccgcaatatctctggaggagagtatattcaaatg
tctgggcgtgctggacgtcgaggattggacgaccgtggtgtggtgatcatgatgtgcgat
gaaaagctggagcctagcgcagcgaagggaatgttgaagggtgtggcggatcggttggac
tcggcgttccacttggggtataacatgattcttaacctcatgaaggtggagggtatcagt
cccgagtttatgctcgagaggtgtttcttccagttccagagcagtgctgctattccacaa
ctcgaggatgaactgaaggcggaacaggaagcgcataggaagatcgtggtacccgacgag
gctttggtctcgcagtactacgacctccgccaacaactagaccaaatgggagccgacttt
agggaaatcgtaactcatcctgcatattccttacctttcatgaaacctggacggttagtg
aaagtcaagcatggaaaacacgactttggatggggaatcgtcgtcaactaccaaaagaga
acgcctcctcggaaccggccaggacccagtgtcgacagccttccaccacacgagcaatac
gtcatcgatgtcctccttaacctcgcttctacccactccccctccgccaaagaccgcgat
gccatggctgccaccccagatggcatccagccttgtcctcaaggacagaagggtgcccct
caagttgtacctgtcctcctctccaccatcgattcaataagccatctgcgaattgttctt
cccaaggacttgaggcaagatcaagccagggaaacggcatggaagagtgtgttggaggtt
caaagacggttcccgaaagggattgcactcttggacccggtggagaatatgaacatcaag
gatgagaagttcaaggagttggtcaagaaaatcgctgcgactgaacaaaaactattctct
tcaccgttgcataaagatcctcggcttcctgaactctacaccctcttctcgcagaagaag
gaatcgcttgaacgcatttcagccctcaagaagcgcatccagagcacgcaggatgtcctt
cagatggaggaactgaagtgtcgtaagagggtgctgaggaagctgggtttcacgacagcc
aatgacatcgtcgatgtgaagggtcgagtagcctgtgagatcagttcgggtgacgagttg
ttgttgaccgagttgatcttcaatggtgctttcaatacactgaagccggaacagtgtgct
gcgctgttgagttgcttcgtgtttggagagaagagtgaccagcagacgaagttgacggaa
gaacttacggctcctctgcgtgtcatgcaagagcttgcgaggcggatagccaaggtctcg
aaggaatctttactcaccattgacgaagacgagtatgtctcgagtttcaaagttgagttg
atggaggctgtcgtccaatggtgccggggcgcatcgttctctgatatctgcaagctcaca
gatcagcttttcgaaggctctcttattcgagtcttccgccgtctgggtgagctgctgagg
cagatggctcaagctgctaatgttattgggaatgaagagttgaaggagaagtttgagacg
gctttggagatgttggagaggccgaacagtgttattttctgttcgagtttgtatctgtag
DBGET
integrated database retrieval system
