Coprinopsis cinerea (gray shag): CC1G_10289
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Entry
CC1G_10289 CDS
T01275
Name
(RefSeq) nuclear matrix protein NMP200
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03040
Spliceosome
cci04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC1G_10289
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CC1G_10289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cci03041
]
CC1G_10289
04121 Ubiquitin system [BR:
cci04121
]
CC1G_10289
03400 DNA repair and recombination proteins [BR:
cci03400
]
CC1G_10289
Enzymes [BR:
cci01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
CC1G_10289
Spliceosome [BR:
cci03041
]
Complex B
Other components
Prp19 complex
CC1G_10289
Complex C
Prp19-CDC5 complex
CC1G_10289
Ubiquitin system [BR:
cci04121
]
Ubiquitin ligases (E3)
U-box type E3
CC1G_10289
DNA repair and recombination proteins [BR:
cci03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
CC1G_10289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Prp19
WD40
ANAPC4_WD40
U-box
zf-Nse
Rtf2
Motif
Other DBs
NCBI-GeneID:
6005043
NCBI-ProteinID:
XP_001828618
UniProt:
A8N170
LinkDB
All DBs
Position
1
AA seq
506 aa
AA seq
DB search
MFFCAISGEPPQEPVVSAKSGKVYEKRLIVKYIHENGTDPITGDKLEESDLIAIKASPEN
APPRPPTNTSIPALLQLLQNEWDAMVLSTHALEQKYNATRQELSYALYSQDAANRVVARL
IRERDAAREALANVQASMGIAPSQPTGGEDVEMAENGGVEEGLPADIVTQIDETHAVLSA
ARKKRKTPPGYAAPAEVKTYKATHTIPSLHSASPAGITSIALSTSNPSQFLTGGNDHIVQ
LYDRSTDKVLASLKGHSKKVNHVAFREREGDNTLLLSAGADKIAKIWGHDGASGEYIPKA
TIRTHKGELTGLAVHPTKTLLALSSVDKTYSLHDLSTFQQVFRSAPTDEPFSSMAVHPDG
TFLAIGTPTSTIHIYDVRAGAIAASLTPPDAVPFTVHTLSFSENGYNLVAPNSLSSIALW
DLRKEKITASIDLGDDFKVNKVLCDASAQFIGVAGNQGARIFAQKSREELLRLEEGGEVS
DFAFGAQGKEIWGATGREVRIWGASA
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctgtgctatctctggagagcctccccaggagcccgtcgtgtctgcaaagtca
ggcaaagtttacgaaaagcgactcatcgtcaagtatattcatgaaaacggaacagatcct
attactggggataaactggaggagtctgacttgattgcgattaaagccagccctgaaaat
gctcctcctcgacctccaacaaacacctcgatacctgctttgctccaacttttgcagaat
gaatgggacgctatggttctaagcacacatgcgctggaacaaaagtacaacgccactcga
caggaactcagctacgcactctacagccaggatgctgccaatcgtgtggttgcacgattg
attcgtgagcgtgacgcggcacgagaggctcttgcaaacgtgcaagcttccatgggaatt
gcaccttcccagcccaccggcggcgaggacgtcgaaatggcagagaacggaggcgttgag
gaaggacttcccgcagatatcgtcacccaaatcgacgagacgcatgcggttctgtcggca
gcccgaaagaagcgaaagactcctccaggatacgccgccccggcagaggttaagacttac
aaggctacccacaccatcccatccctccattccgcttctcctgccggcatcacctccatt
gctttgtccacgtccaacccttcgcaattcctcacgggcggtaatgaccatatcgtgcag
ctctacgatagaagcaccgacaaggttctcgcttcacttaagggtcattcgaagaaggtg
aaccacgtcgccttccgagagcgcgagggtgacaacaccctgctcctctcggctggtgcg
gacaaaatcgccaagatctggggacatgacggcgcgtcgggcgagtacatccccaaggcc
accatccgaacccacaagggtgaactcaccggcctcgcggtccaccccaccaagaccctc
ctcgccttgtcctctgtggacaaaacctactcgctgcacgatctctcaacattccagcaa
gttttccggtctgcgccaacggacgagccttttagctcgatggctgttcaccccgacggc
accttcttggccattggaacgcccacctctactatccacatttacgacgttcgcgctggt
gctattgcagcctcattgacaccccccgatgccgtccccttcaccgtccacacgctgtcc
ttctcggaaaacggatacaatctcgtcgcccccaactccctctcctccatcgctctttgg
gacctccgaaaggagaagattaccgcttccatcgaccttggagatgactttaaggtcaac
aaggtcctttgcgatgcttccgcacagttcatcggtgttgctggtaaccagggtgctcga
atcttcgctcagaagtcgcgcgaagagctgttgcgcttggaagaaggtggagaagtcagc
gactttgcgtttggagcacaaggcaaggagatttggggtgctactggacgggaggtcagg
atttggggagcctccgcttaa
DBGET
integrated database retrieval system