KEGG   Coprinopsis cinerea (gray shag): CC1G_10654
Entry
CC1G_10654        CDS       T01275                                 
Name
(RefSeq) histone deacetylase RPD3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cci  Coprinopsis cinerea (gray shag)
Pathway
cci03082  ATP-dependent chromatin remodeling
cci03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cci00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CC1G_10654
   03083 Polycomb repressive complex
    CC1G_10654
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cci03036]
    CC1G_10654
Enzymes [BR:cci01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     CC1G_10654
Chromosome and associated proteins [BR:cci03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     CC1G_10654
   HDAC complexes
    Sin3A-HDAC complex
     CC1G_10654
    BRAF-HDAC complex
     CC1G_10654
    REST complex
     CC1G_10654
    SHIP complex
     CC1G_10654
    MiDAC complex
     CC1G_10654
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     CC1G_10654
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    CC1G_10654
  Chromatin remodeling factors
   NuRD complex
    CC1G_10654
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 6015691
NCBI-ProteinID: XP_001839089
UniProt: A8P659
LinkDB
Position
5
AA seq 557 aa
MSKRKVAYFYDPCGLTNIAADVGSYTYGLGHPMKPHRIRVTHDLVTAYDMLDQMHVLRPT
RATAETMTKFHTDEYVHFLNRVTPETAEELTYHGTRFLVGEDNPAFEGVFEFCSISAGGS
IGAAQRIASGAADIAINWAGGLHHAKKREASGFCYINDIVLGILELLRIYPRVLYIDIDC
HHGDGVEEAFYTTDRVMTCSFHKFGEYFPGTGTQEDRGRGKGKGYAVNVPLKDGITDESF
KSVFEPVISKILEVFKPSAVVLQCGADSLAGDKLGCFNLTMYGHAHCTQFLRKHNIPLIL
LGGGGYTVKNVARTWTYETACALGIENDIDVNLPWNPYFEWFGPRYRLEVAENNMDDLNI
KEGSLDKVRINALEQLRELTPAPSVQLQDVPRDSVGKHLGFGIDDGQPRDDLDERLAQHA
RYIYNLQESAEAPSSDSEEGSSDSDDSSASHWNRQRSRRIGTGKKRMSLLTNQYYDIPHE
YGFSPHDYHGHLSKTTRRRFFQSGSRWDENVEQVINDRMQSVNGYPRHSLSATMERGGSW
GDRGGEDDDWDGDVSMH
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgtcgaaacgcaaagtcgcttatttctacgatccttgcgggctaacgaacattgcagcc
gatgtgggttcgtatacgtatgggttgggccaccccatgaagcctcacagaataagggtg
acacacgatcttgtgacggcctacgacatgctggaccagatgcacgttttgcgaccaaca
cgcgcaaccgccgagacaatgaccaagtttcataccgatgaatacgtgcatttcctgaac
agagtaacgccagagacggcagaagagttgacgtaccatggaacacgattcctggtcggc
gaagataacccagcctttgaaggagtgttcgagttttgttcaatatcggcgggagggtca
ataggtgctgcgcaacgcattgcatctggagcggccgacattgccattaattgggctgga
ggcctgcaccacgccaagaagcgcgaagcctcagggttctgctacatcaatgacattgta
ctcggcatactcgaacttctacggatatacccccgcgttctgtacatcgacatcgactgc
caccacggagatggtgttgaagaggcgttctacacgacagaccgagtgatgacatgcagc
ttccacaagtttggagaatatttccctggaacgggtacgcaagaggatcgcgggcgtggc
aaagggaagggatatgcggtgaatgtaccgctgaaggatggtatcacagatgaaagtttt
aagagtgttttcgaaccagttatcagcaagattctagaagtgttcaaaccatcagctgtc
gtgctccaatgtggtgccgattccctcgcaggcgacaagctcggatgtttcaacctcacg
atgtacggccatgctcattgcacgcaattccttcgcaaacacaacatccctctgatcctg
ttgggcggtggaggttacaccgtgaagaacgtcgcccgaacgtggacatatgaaaccgcc
tgcgccctcggaatagagaatgatattgacgtcaaccttccctggaatccttacttcgaa
tggttcggacctagataccggttagaagtggcagagaacaacatggacgacctcaacatt
aaggagggaagcttggataaagttcgaattaacgcccttgagcaattgcgggaacttact
ccagctccctcggtgcagcttcaagacgtcccaagggacagcgttggaaagcaccttgga
ttcggtattgacgatggacaacctagagatgacctggacgagcgcctagcccaacacgcc
cggtacatctacaacttgcaagagtcggcagaagcgccgtcctctgattcagaagaaggc
tcttccgactccgacgactcctcagccagccactggaaccgacagcgttcgcgacgtatc
ggcacaggcaagaagcgcatgagcttgctcaccaaccaatactacgatatcccacacgag
tacggcttctctccacatgactaccacggccatctatccaagacgactcgccggcgcttc
ttccagagtggttctcggtgggacgagaatgttgagcaggtcatcaacgacaggatgcag
agtgtcaatggttatccgagacattctttgtcggcgacgatggagcggggtgggagctgg
ggagatcggggtggggaggacgatgactgggatggtgatgtgtcgatgcattag

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