Coprinopsis cinerea: CC1G_11229 Help Entry CC1G_11229        CDS       T01275                                  Name (RefSeq) RNA polymerase II large subunit   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism cci  Coprinopsis cinerea Pathway cci03020   RNA polymerase cci03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:cci00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     CC1G_11229   09124 Replication and repair    03420 Nucleotide excision repair     CC1G_11229  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cci03021]     CC1G_11229    03400 DNA repair and recombination proteins [BR:cci03400]     CC1G_11229 Enzymes [BR:cci01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      CC1G_11229 Transcription machinery [BR:cci03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      CC1G_11229 DNA repair and recombination proteins [BR:cci03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       CC1G_11229 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R Motif Other DBs NCBI-GeneID:  6005002 NCBI-ProteinID:  XP_001828577 UniProt:  A8N128 LinkDB All DBs Position 1 AA seq 1745 aa AA seqDB search MIGHQFAFSAAPVRKVKEVQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRM GTIDRNFKCQTCGEGMAECPGHFGHIELARPVFHPGFFNKVKKILECICVNCGKLKADIT DPAFAEKIRHIRNPKQRMAVVWDHCKTKTICEADEPREEGAEGDGDEPKKGHGGCGHQQP QIRKEGLKMFVQYKKSKDDDDEMKSLQPDKRLITPSEILTVFKKISDHDLHLLGLSDEYA RPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASSNVKRCEEEGVPAHI ISEFEQLLQASIFHVATYMDNDFAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV DFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELVRNGPTTYPGARYV VRDTGERIDLRYNKRADAFLQLGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVRLMPYS TFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQD TLCGIRKFTLRDTFLDWNHVQNILLWVPEWDGVVPTPAILKPKPLWTGKQILSLTIPRGI NIQRASENKSSNPVFDDGMLIENGEFIYGIVDKKIVGASAGGLVHVVFREKGPEATKQLF TGLQMIVNFWLFHNGFSIGIGDTIADARTMEFITKNIAESKAKVAQVIEDANMDRLKTKP GMTLRESFESEVEGILNKARDSSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVG QQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLID TAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDAAFIEKQNIETF ALSDKEFDHRYRVDVMDPAGGFTENALQVGIDDSSLELQSKLDEEYARLVEDRRLLRNFI FPRRSANVDFYLPVNLQRLVQNASQIFHIDRRKPSDLDPAYIVDSIHELGKRLVIVRGDD PLSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMC GTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTIHLQPEI AVAPELAKNVQQELAFTSLKTVTSAVEIWYDPNPTTTIIEEDEVFVESFFAIPDEEIERN LHKQSPWLLRLVLDRSKMLDRKLTMHYVASRIAECFKSDLFVIWSEDNSETLVIRCRVLS SGDKDDPEEVGLEEDIFLRQLENTMLNSVTLRGVRGINRVFLTASDRVTLAPDGSIKTEK GAEWILETDGTNLKGVMCLDGVDSTRTYSNNCVEIFTVLGVEAARAALMKEIRNVIEFDG SYVNYRHLGLLCDVMTHRGTLMPITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDD CHGIAENVMFGQMAPMGTGAFDVALDIDMLKDAIVDHRLPVQSMLAAQIDGAMTPGQVAI TPYATNSPDWIQDEFFKGDSGPSAFSPLASNGAEDTANFQYMSFPQSPHGAGGMSPGPGY SPSSPNAYSPTSPGMVPRSPYGAPTSPFSNQYATSPFYDSRRQATSPTYSPTSPIAGLTS PAYSPTSPGFSPTSPNGYSPQSPNFGSPASPNYSPASPSYSPASPAGMSPTSPRYSPASP GASPMSPKYPPASPSFSPASPAYSPASPNYSPSSPTWSPTSPAHDQNGPTNNRSSAYQQS PSWDS NT seq 5238 nt NT seq  +upstreamnt  +downstreamnt atgatcggccaccagttcgctttttccgcggcgccagtccgtaaagtgaaggaggtgcag tttggtatcctctccccagaggaaattaaagctgtatctgtcgtcaaaattgaatatcca gaagtcatggacgaaacaacgcacaaaccgaagttgcagggcttgatggatcctcggatg ggtactatcgaccgtaacttcaagtgtcagacgtgtggcgaggggatggcagaatgccca ggacattttggtcatattgagttggcgaggccggtatttcatcctggcttctttaacaaa gtgaagaagattctggaatgtatctgtgtaaactgcgggaaactgaaagctgatatcacg gatcccgcattcgcagaaaagatccggcacattcgaaaccccaagcagcggatggctgtc gtctgggatcattgcaagacgaaaactatttgcgaagcagacgaaccccgagaagaaggg gctgagggtgatggtgatgagcccaagaagggccatggaggctgcggccaccagcaaccg cagatcaggaaagaaggtctcaagatgtttgtacaatacaaaaaatcgaaagacgacgac gatgagatgaaatccttgcaacccgacaagcgactaatcacaccgtcggagattttgacg gtcttcaaaaagatttctgaccacgatctgcacctcctcggtctttctgacgagtatgcg aggcccgagtggatgattctgactgtccttcctgtccctccgccacctgttcgccccagt atcgcggtcgacggaggcacaatgcgtagtgaagacgacttgacctacaagctcggcgat atcatcaaagcttcgagcaacgtgaagcgctgcgaggaggagggtgtgcctgcccacatt atctctgagtttgagcaactgctgcaggcaagtatattccacgttgccacctacatggac aatgactttgctggtatcccgcaagcattgcaaaagtccggtcgtcctgtcaaggcaatc cgagcccgtttgaagggcaaggagggtcgtctgcgagggaacctgatgggaaaacgtgtg gatttctcagctcgtactgtcattacaggtgatccaaacttggaactcgatgaagtcggt gtgccgaagagtattgccatgaacttgacataccctgaacgagtcactccgtacaacatc gcctacctacaggaactggttcggaatgggccgacgacgtatcctggcgcacgttatgtt gtgagggacacaggagagcgtattgacttgcgctataacaagcgtgcagacgctttcctg caacttggatggatcgttgagaggcatctgaaagacggagactacgttctgttcaaccgt caaccctctctgcacaagatgagtatgatgagccatcgtgtgcgactgatgccttattca acgttccgtctgaatctttctgttacaccgccctacaacgctgatttcgacggtgacgaa atgaatatgcacgttccgcagagcgaggagacacgcgccgaactcagtcagattgcttgg gtaccccggcagattgtttctccgcaagccaacaagcccgtaatgggcatcgtccaggat actctctgtggcatccgcaagttcaccctccgcgacaccttcctcgattggaaccacgtt cagaacatcttgctttgggtacccgaatgggacggtgtcgttcctacgcctgccatcctc aagccaaagcccctctggaccggaaaacaaatcctcagcttgacgatcccaagaggtatc aatattcaacgcgcttccgaaaacaagtcctccaatccagttttcgatgacggcatgcta attgagaacggcgagttcatctacggaatcgtcgacaagaagatcgttggtgcatcagct ggtggtctcgtccatgttgttttccgagagaagggcccggaggcaacgaagcagctattc actggtcttcaaatgatcgtgaacttttggttgttccacaacgggtttagtatcggaatt ggcgacaccattgccgacgccaggaccatggagttcatcacgaagaatatcgcggagagt aaagccaaggtggctcaagtcatcgaggacgccaatatggatcgtctgaagaccaagccg ggtatgactctccgagagtcttttgagagcgaagtcgagggtatcctcaacaaggctcgc gacagttccggtcagtacgcccagaagcatttgaaggaagacaacaacgtgaagcagatg gtggtcgccggttcgaagggttccttcatcaacatctcccagatgtccgtctgtgtcggg cagcagtctgtggaaggtcgccgtattcctttcggtttccgtcaccgcaccctccctcat ttcaccaaggacgacttcagccctgaagcccgtggtttcgtcgagaactcgtacttgcgt ggccttacaccccaagagttcttcttccatgccatggccggtcgtgaaggtttgatcgat accgccgtcaagaccgccgaaaccggttacattcaacgacgtctcgtcaaggcgctcgag gatgtcatggtctgctacgatggcaccgtccggaactccttgggcgaccttattcagttc gtctacggcgaagatggtatggacgcggccttcatcgaaaagcagaacatcgaaaccttt gcgctcagtgacaaggaattcgaccatcgataccgcgtcgatgtcatggaccctgccggt ggcttcacagagaatgccctccaagttggtattgacgacagctcgttagagcttcaaagc aagcttgatgaggagtatgctcgacttgtcgaagaccgtcgcctattgcgtaacttcatc ttcccccgccgctcagccaacgtcgacttctaccttcctgtcaacctccagcgtctggtc caaaacgccagccagatcttccatatcgatcgccgcaagcccagtgaccttgacccagcc tacatcgtcgattcgatccatgaactcggcaaacgcctagtcatcgttcgcggcgatgac cctctgagcaaggaggcccaggacaactcgacattgcttttccgaatgcacctccgtgcc actttcgctgcacgcaaggtcatcgaacagatgcgcttgaccagggaggccttcgaatgg attttgggagagattgagaccaagttcaatcaatccattgcccaccccggagagatgtgt ggtacattggccgctcaatccatcggtgaaccagccactcagatgaccctgaacacgttc cactacgctggtgtgtccagtaagaacgttacgctcggtgtgccccgtctcaaggaaatc atcaacgtcgccacaaacatcaagaccccttccctcaccatccacctccaacccgaaatc gctgttgctccggaactagcgaagaacgtccagcaggagcttgcctttacctcactgaaa accgtcacgtcggcagtcgaaatttggtacgaccccaatccaactacgactatcatcgag gaggatgaagtgttcgtcgaatccttcttcgctattcccgacgaagaaatcgaacgaaac cttcacaaacagtcaccctggttgctccgtctcgttttggacaggtcgaagatgcttgat cgcaaactgactatgcattacgttgcaagtcggattgccgagtgtttcaagtctgacctc ttcgtcatctggagtgaagataactccgagacgctggtcattcggtgccgtgtgttgtcc agtggggacaaagacgatcccgaagaagttgggttggaggaggacatcttccttaggcag ttggagaacactatgttgaactcggtcactcttcgtggtgtccgaggaatcaaccgtgtg ttcttgaccgcttcggacagggtcactcttgctccagacggcagtatcaagaccgaaaag ggtgcagagtggattctggagaccgacggtaccaatctcaagggcgtcatgtgtctcgat ggtgttgactcaacaaggacatactcgaacaactgtgtcgaaatcttcactgtcttgggt gtcgaggctgctcgtgcggcgttgatgaaggaaatcaggaacgttattgagttcgatggc tcttatgtcaactaccgacatctgggcttgctttgcgacgtcatgacacaccgtggtacg ctgatgcccatcactcgacatggtatcaacagagcagacaccggtgccctcatgcgttgc tccttcgaagagaccgtcgaaatcctcatggaagctgccgccgttggcgagaaggatgat tgccacggtatcgcggagaacgtgatgttcggtcagatggcacccatgggtacaggcgca ttcgacgtcgcgctcgacattgacatgctcaaggacgccatcgttgatcacaggctaccc gtccagtcgatgttggccgcacagatcgacggcgctatgacaccaggacaggttgccatc acgccctatgccaccaactctccagattggattcaagacgaattcttcaagggagattca ggtccttcggccttctctcctctggcatcgaacggtgctgaggacacagccaacttccaa tacatgtcattcccccaaagtccccatggggcaggtggaatgtcacctgggcctggttac agtccgagctcaccgaatgcttactcccctacgtcaccaggcatggttcctcgatcgccg tatggtgcacccacatcgcccttcagcaaccaatacgctacctcccccttctacgatagc cgcagacaagcgacgtcccctacctattcaccgacctcaccgattgctggattgacgtcg cctgcgtactcaccgaccagtccaggcttctcccctacatctccgaacggttatagcccg caatcccccaactttgggagcccggcatcacccaattactcgcctgccagtccatcgtac agccctgcttccccagcgggaatgtcacccacatctcccagatactcgcccgcctccccc ggagcttctcctatgtctcccaaataccctcccgcatctccctccttctctcccgcatct cccgcttactctcctgcatctcccaattatagccccagctcaccgacatggtcacccacc agtcctgcacatgaccagaatgggcccaccaacaaccgcagctctgcttaccagcaatcc ccgtcatgggacagctaa

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