Coprinopsis cinerea (gray shag): CC1G_11565
Help
Entry
CC1G_11565 CDS
T01275
Name
(RefSeq) cleavage/polyadenylation specificity factor
KO
K06100
symplekin
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CC1G_11565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cci03021
]
CC1G_11565
03019 Messenger RNA biogenesis [BR:
cci03019
]
CC1G_11565
Transcription machinery [BR:
cci03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CC1G_11565
Messenger RNA biogenesis [BR:
cci03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CC1G_11565
U7-dependent histone pre-mRNA processing factors
CC1G_11565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
6008038
NCBI-ProteinID:
XP_001831568
UniProt:
A8N9R2
LinkDB
All DBs
Position
7
AA seq
1135 aa
AA seq
DB search
MAANPVNALQTLQAALVAEPNTKEQADILATLRESLESHPSPIPTIVDTLISRIAVNAGD
SLLKRWILDLLQFAIARSTLPLETRTQNDPVTAIVKTVVQCMTTVYPLVFRHLCQNRNNP
GTWNTLSTCKARIIECLWSPATSVGVKLSAMKDTDLLSALLNSWANLARLRPPMVPILIT
TLKQWTPNALVNLSASQIRSVEKAVRILLVHISRLPGNSQYGPQINEALQQQAVRMERAA
IEEKKRKAAGLPDNRKRPPSAPSEQPSEAKRIKLENEAPPPNNAAALLAGFDFTSLPAAL
ITELIVANLDAFSDAALTALVHKYRQTLVGAAPAAAPQPAPTPVPPVAKPTPPPNAPSGP
RKDRRSPLPEGTPVPSGQPPQAAAAEEIKEEPVDPLQMAIDDEEIEFEPEKLNNELSTRA
PVAESQPSAIEADIESINLQLVDFKLPPPSDWDEDDRTKIISKSLTRIWDGADELKSFGE
AIPVDSSQAGGHSATELWMLLIVRMITRVAKPPQDLLGGGDQDQDEKMKEGNEVSTPVED
FYARQDQLRQTICEYIMTDFPSRVRLATTWMNEEWYNDQIRTAKDPSWRPNYDTWLNQIV
ASYQTILDGKDKTFARFLLDLPSVPADVLDLLRELCVDSTSPERMQVGYTTLRGLVSQRP
SLRIEALNVLLELTTHPERKTRAAAINTVKMWVPNTQPMFGLIREFALQMLRKLQQTKAP
PKSGNEAPNSEGKDKPPAENGKDGHGPGPTPAKQADVPMEQDGGDKPADGDMEDGQVTVP
PEDLVQTPYLPNTVDLPANKQQVLQHLELLFALSVKVPEFLEQIFLAFGKMDISVQEAIQ
ELITQLIRSLGPNHGKLLTLLRTCPKGSENLALRVLNIFTEHGRPSAQLVALVKSLINER
DLDARFLIPIIAEMDKSDIIKYLPRIVSILNGKPEPKNLVRSVFSSIVTTPPQTFGSVTS
NLPRVRQSELLTPAELMVLLHESEKEIGFKAAMEAIGICFSMADVYRSEILGVVMQQIMD
NTVIPTLFMRTLPKDRLKELVDKHPSLKAGLRDFVTKKAANKARQAGILDILDAPGPSAS
STPAAGSTTSAAPVADGAGSAAASRHSTPAQPEQTGAPIQVVGSERTDPPDVSES
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaatccagtaaacgccctgcagaccctgcaggctgcccttgtagccgagcca
aataccaaagaacaagcagacattcttgccactttacgtgaatctttagagtcccatccg
tctccaatcccaactatcgtcgacactctcatttcccgcatcgctgtgaatgctggggac
tctttgctcaagagatggattctcgacctccttcagtttgcaattgcccgctcgactttg
ccattggagacgcgaacacagaacgacccagtcaccgccatcgtcaaaacagtcgtccaa
tgtatgaccaccgtctaccccctcgtgttccgtcatctatgccaaaaccgaaacaacccc
ggaacctggaacacactttctacctgcaaagcgcgaataatcgaatgtctgtggtcacca
gcaaccagcgtcggcgtcaaactttcagccatgaaagataccgacctcctctctgccttg
ctcaactcatgggccaatcttgcaaggcttcgtccgccaatggtccccattctcatcaca
acgctgaaacaatggacaccgaacgcccttgtcaatctgtctgcgtcgcaaatcaggagc
gtagaaaaggccgtccgaattctcttggtccatatttccagacttcccgggaactcgcag
tatgggcctcagatcaacgaagcactccagcaacaggcggtgcgaatggaacgcgccgct
atcgaggagaaaaagcgcaaggcagcaggccttcccgacaaccgaaagcgcccgccttcc
gccccttccgaacaaccttcagaagccaagcggataaagttggaaaatgaagcccctccg
ccgaacaatgctgccgcccttttggccggtttcgacttcacctccctacctgccgcctta
atcaccgaactcatcgtcgccaatcttgacgcgttctcagatgcagcgctgaccgcgctc
gttcacaaataccgccagacactggtgggagctgctcctgctgctgccccgcaacctgcc
cctacacctgtccctcccgtcgccaagcccactccccctccaaatgcgccctcaggccca
aggaaagaccgacgttcaccactgccagaaggtacaccagtaccatccggccaacctcct
caggctgctgccgcagaggagatcaaagaagaacccgtcgacccacttcaaatggctatc
gacgacgaggagatcgagtttgaacctgagaaactcaacaacgagctttcaactcgcgct
ccagttgccgaatctcagccaagcgccatcgaagcagacattgaatcgatcaacctccaa
ctcgtcgatttcaaactccctccaccctccgactgggatgaagatgaccggaccaagatc
atctcaaagtcgctcacacggatatgggacggcgctgacgaactcaagtccttcggtgaa
gcgatccctgtggattcctcgcaagctgggggccattctgccacagagctttggatgctg
ttgatcgtgcggatgatcacgagggtggcgaaaccaccgcaggacctgttgggaggcggg
gatcaggatcaggatgagaagatgaaggaggggaatgaagtttcaaccccagtggaggac
ttctatgctcggcaggaccagctaagacaaacgatctgcgaatatatcatgaccgacttt
ccctccagggtacgtcttgcgacaacgtggatgaacgaagagtggtacaacgaccagata
aggacggcaaaggaccctagctggagaccgaactatgatacgtggttaaaccagatcgtc
gcttcttaccagaccatcttggatgggaaggacaagacttttgctaggttcttgcttgac
ctgccttctgtaccggcagacgtgctcgacctgcttcgggagttgtgcgtggacagtaca
agcccggaacgaatgcaggttgggtatacgacgctgcggggactggtcagtcaacggcct
tcgctgcggatcgaagctttgaacgtgttactcgagttgactacacacccagaacgcaag
acgcgtgccgcggccatcaacacggtgaagatgtgggttcccaacacacaacctatgttc
ggtctcattcgagagtttgctctccaaatgctgaggaagctgcaacaaaccaaggctccg
ccgaagagtggcaacgaggcgcctaatagtgaagggaaagataagcctcctgcggagaat
ggaaaggacggacatggtcctgggccgacacctgcaaagcaagctgatgtgccaatggag
caggatggtggcgacaaaccggccgatggggacatggaggatggacaagtgacagttcct
ccagaagatctggttcaaacgccctacctgcccaacaccgtagatctcccggccaacaaa
caacaagttctccagcaccttgaattgctctttgctctgtcagtcaaagtgcccgagttc
ttggaacaaatcttcttggcttttgggaaaatggacattagtgtccaggaagcgattcaa
gagctaataacgcaactcattcgttcgcttgggccgaaccacggaaagctactcacatta
ctgaggacgtgtccaaagggatcggagaacctcgcgctccgggtgctcaacattttcact
gagcacggacggccgagtgctcagttggttgccttggtcaagagcctgatcaatgagcgt
gacttggacgcgcgattcctcattcccatcattgcggagatggacaagtcggatatcatc
aaatacttgccccgcatcgtgtcgattctcaatgggaagccggagcccaagaacctcgtc
cgttccgtgtttagctcgatcgtcaccactcctccgcaaacattcggaagtgttacctct
aatctccctcgtgtgagacagagtgaactgctgaccccggccgaactgatggttttgtta
cacgagtcggagaaggagattgggttcaaggctgcgatggaagcgattggaatctgcttc
tccatggcggacgtttaccgctccgagattttgggtgtggttatgcagcagattatggac
aacactgtgattccgacattgttcatgcgaacgctgcccaaggataggttgaaggagttg
gtggataagcatcctagtttgaaggccgggttgagggactttgtgacgaagaaggctgcg
aacaaggcgcgtcaggcgggaattctggatattttggacgcgccgggtcctagtgcttct
agtacacctgcggcgggttcgacgacgtctgctgcacctgtggcggatggtgcagggagt
gcagcggcgtctcgtcattcgacacctgcccaacctgagcagacaggtgcccctattcag
gttgttggatctgagagaacagacccaccggacgtttcggaatcgtag
DBGET
integrated database retrieval system
