Coprinopsis cinerea (gray shag): CC1G_12010
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Entry
CC1G_12010 CDS
T01275
Name
(RefSeq) pre-mRNA splicing factor
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC1G_12010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cci03041
]
CC1G_12010
Enzymes [BR:
cci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CC1G_12010
Spliceosome [BR:
cci03041
]
Complex C
Other components
Step II factors
CC1G_12010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
SLFN-g3_helicase
ATPase
T2SSE
AAA_30
AAA_16
PhoH
SRP54
AAA_7
ABC_tran
NACHT
Motif
Other DBs
NCBI-GeneID:
6004986
NCBI-ProteinID:
XP_001828562
UniProt:
A8N105
LinkDB
All DBs
Position
1
AA seq
1312 aa
AA seq
DB search
MALGSAGHAGVSASAIDCQSQSPTRRASGERIDFDPVIDQVPRIFNNSNSMASTTTSNDD
FVHGIAIKLSRAMVALNPVISVNPNDLLARNVINLARDNDSVESFMKAARAFGKFQDSFL
FELYTEIRTHIKEETTGVSAQPVPGITVHDSDVLEPAPVRPGGLQRPDKRHTFRQPAKLE
PPTPRASVLGLDRLASEKRAALAMEKAGGSSESRKRPRLDDGDEPFFKVPSIPARVANQR
QRGEETPSHPGGLSEVARKRLEEHKRNREKQREGLQARNEPRSDAPKGLGDFQRRSNRDW
DRRGRDRDYRDRDYRDGGSSRDAPSVRVPNVGWESTPKHPRGDDGGWGGARDRRWDAPTP
RIARAGEDEEGAAINFDMREWEEEQVKLDRDWYTGAEDGGVAGDEDHNPLAQYEDLAASK
QAEIATKQTRKISARQAQYNADNDLWEANRMLTSGVATRKTIDLDFEDESESTVHVMVKN
LKPPFLDGKTVFTKQLDPINPIRDPTSDMAVFSKKGSALVKEKREQAERAKAAAKLAALG
GTALGNIMGVKDEEAEAEAEAEQKAREAKEKGEENYKGDSKFATHLKSSSGVSSFAKSRT
LKEQREYLPAFACREELLKVIRENQVVIVVGETGSGKTTQLAQFLYEDGYCQYGLVGCTQ
PRRVAAMSVAKRVSEEMECKLGGTVGYAIRFEDCTSAETKIKYMTDGVLLRESLNEGDLD
RYSVIILDEAHERSLSTDVLMGLLRKILSRRRDLKLIVTSATMNAEKFSNFYGNAPCYTI
PGRTFPVEIFHSKSPCEDYVDAAVKQVLQIHLSLPPGDILVFMTGQEDIEVTCQVVQERL
DQLDDPPPLAVLPIYSQMPADLQAKIFDATDDGRRKVIVATNIAETSLTVDGILYVVDSG
YSKLKVYNPKVGMDALQITPISQANANQRTGRAGRTGSGFCYRLYTEMAYRNELFENTIP
EIQRTNLANTVLLLKSLGVKNLLEFDFMDPPPQANILNSMYQLWVLGALDNNGDLTPIGR
KMSEFPMEPSMAKMLIASVEYKCSAEMLTIVSMLSVPSVFYRPKERMEEADAAREKFNVP
ESDHLTLLNVFNQWKSHGFQDSWAMRHFLHPKLLRKAREVRAQLEDIMKFQKMDIVSAGT
DYDLLRKAITAGYFHQAARVKGIGEFVNIRSGLPTHLHPTSALYGLGYTPSYVVYHELIL
TSKEYMTQVTAIDPYWLAELGPVFYSVKEKNFDGRSDTRQISREFSKQKEIEQEMARQRE
EAARKEAELALAKQKKSGGSSQQKVVIPGTPRHTGVGAGARVTQTPRRRVGI
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcactgggtagcgctggtcatgcaggggtcagcgcttcagcaatcgactgccaatcg
cagagtccgactcgaagggcgagtggggaacgtattgactttgaccctgtcattgaccaa
gttcctagaatcttcaacaactcgaattcgatggcctcgacgacgacaagtaacgatgat
tttgttcacgggatagcaataaaactctccagggcaatggtcgccctcaaccctgttatt
tcagtcaatccaaacgacttgttggcccgcaatgtcattaatctagcaagggacaatgac
tcggtcgagtctttcatgaaagctgccagagcgtttggaaaattccaggactcgtttctg
ttcgaattgtatacagaaatccgaactcacatcaaggaggaaacgactggcgtttcggca
caacctgtacctggaatcaccgtccatgatagcgacgttttggaacccgctccagttcga
cctggtggattacagagacctgacaagcgtcatacgttcaggcaaccggccaagttggaa
cccccgacacctcgagcatcggtactgggtctggacagactggcgtcggagaagcgggct
gcactggcgatggagaaggctgggggttccagcgagagcaggaaaaggcctcggctcgat
gacggagatgaaccgtttttcaaagtccccagtatccctgcgcgcgtagccaatcagcgt
caacgtggagaggaaacaccctctcatccaggtggcttgtcagaggttgcgagaaagcgg
ttggaggagcacaagaggaatagggaaaaacaacgagagggtttgcaagcgaggaacgaa
cctcgaagtgacgcacctaaaggtctgggagacttccagcgtcgatcgaatcgtgattgg
gaccgccgtggtcgtgaccgagactaccgtgatagagactaccgtgacggagggagctcg
cgcgacgcaccaagcgtccgagttccaaacgtagggtgggagtcgacacctaagcacccg
cggggggacgatggaggatggggaggagcgagggaccgccgatgggacgcgccgacaccc
aggattgcacgtgcgggagaggacgaggaaggcgcagccatcaactttgatatgcgggag
tgggaggaagagcaggtcaagttggatagggattggtatactggagcagaggatggcggc
gtggcaggagacgaggatcataatcctttggcacagtatgaagatctggccgcttccaag
caggcggagattgcgacgaagcagacgaggaagatctctgctcgtcaagcacaatacaat
gccgacaacgatctttgggaagctaatcgaatgcttacgtccggtgtggccactcgcaag
actatcgaccttgactttgaagatgaatccgagtcaaccgtgcatgttatggttaagaac
ctcaagccgcctttcctggacggcaagactgtcttcacgaaacaattggaccctatcaac
ccaattcgagacccgacgagcgacatggccgtattctcaaagaaaggaagcgccctggtc
aaagaaaagcgcgagcaagccgagcgagcgaaagcagctgccaaactggccgcacttggt
ggtaccgctttgggtaacatcatgggtgtgaaagatgaagaggccgaagcagaagcggaa
gccgagcagaaagcccgggaggctaaagagaagggcgaggagaattacaagggcgactcc
aaatttgctacccatttgaagtcttcttccggtgttagctcattcgcgaagagtcggact
ttgaaggagcaacgcgagtatcttcctgcgtttgcgtgtagggaggagcttttgaaggtt
atccgagagaaccaagttgtcatcgtggttggtgagactggttcaggtaagacgacacag
ttggcccagttcttgtacgaagatgggtattgccagtacggtcttgttggatgtacgcag
ccccgtcgtgttgctgccatgtccgtcgccaaacgtgtcagcgaggagatggagtgcaag
cttggcgggaccgttggctatgccattcgtttcgaggattgtacgtctgccgagacgaag
atcaagtacatgaccgatggtgtcctcctgcgtgaatcgcttaatgaaggggaccttgat
cgttatagcgttatcatcttggatgaggcccatgaaaggtctctgagtacggacgtgttg
atgggtttattgaggaagatcttgtcccgtcgtcgagatctcaagctcatcgtcacttct
gccaccatgaacgctgaaaaattctccaacttttacggcaatgctccatgctataccatt
ccggggcgaactttccctgtcgaaattttccactccaagtctccttgcgaagactatgtg
gatgcggctgtcaagcaagtactgcagattcatctttcgctgcctccgggagatatcctg
gttttcatgactggacaagaggatattgaggttacttgtcaagtcgtgcaagagcgactg
gatcagctggatgatccaccgccactggctgtcttacccatctactcccaaatgccggcg
gatttgcaggcgaagattttcgatgctaccgatgatggccgaagaaaggttatcgttgcg
accaacattgcggaaacgtctttgactgtcgatggtattctgtatgttgtcgactcggga
tactcgaagctcaaggtgtacaacccgaaagttggtatggacgctttgcagatcacgccg
ataagccaggcgaatgcgaaccagagaacgggtcgtgctggacgaacaggaagtgggttc
tgctatcgcctgtatacggagatggcatacaggaatgagttgtttgagaacactattcct
gagattcagaggaccaatttggcgaacacggtcctacttctaaagtctctgggtgtgaag
aatcttttggagtttgatttcatggatcctccacctcaggccaatatcctcaactcgatg
taccaactttgggtacttggggcgctcgacaacaatggtgatctcacacccattggtcgc
aagatgtcagagttcccgatggaaccgtccatggcgaagatgttgattgcttcggtcgag
tacaagtgctcggcggagatgttgacgattgtgtcaatgttgtctgttccgagtgtgttt
tatcgacctaaggagaggatggaggaagcggatgctgcgcgtgaaaagttcaatgttccg
gagagtgatcatttgacacttttgaacgtgtttaaccagtggaagagccacggattccag
gatagctgggctatgcggcactttttgcatcccaaacttcttaggaaagcgcgggaagta
cgagcgcagctggaggatattatgaagttccagaagatggatatcgtttctgctgggaca
gattatgatcttttgaggaaagcgatcacggctgggtacttccatcaggctgcaagggtg
aagggtatcggagagtttgtcaatatccgatctggcctgccgacgcatttgcaccctacg
agtgctctgtatgggcttggatatacgccgtcatatgtggtgtaccatgagcttatcctc
acctcgaaagagtacatgacccaggtcactgctatcgacccgtattggctagctgaactc
ggacccgtgttctactctgttaaagagaagaacttcgacggaaggtcagacacacgtcaa
atttcgcgcgaattctccaagcaaaaggagattgagcaggagatggcgcggcagcgtgag
gaggctgctaggaaggaagcggagcttgctttggcgaagcagaagaagagcgggggttca
agccagcagaaggtggttatacccggcacgcctcgccacactggtgttggagctggagct
cgtgttacacagactcctagacgaagagttgggatttag
DBGET
integrated database retrieval system
