Coprinopsis cinerea (gray shag): CC1G_12434
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Entry
CC1G_12434 CDS
T01275
Name
(RefSeq) hypothetical protein
KO
K12586
exosome complex component RRP43
Organism
cci
Coprinopsis cinerea (gray shag)
Pathway
cci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC1G_12434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cci03019
]
CC1G_12434
Messenger RNA biogenesis [BR:
cci03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CC1G_12434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
6015766
NCBI-ProteinID:
XP_001839162
UniProt:
A8P6I1
LinkDB
All DBs
Position
5
AA seq
237 aa
AA seq
DB search
MDETPSLSHGHNPLNLTSTFPHRPSLTYSIHHPQTRKTVPNLDLPALCSPKFKPGPPTDE
SQVLSDRLNEALVTYVCLPSYIHLAYGLHICPGLSLPTQRTTTFFFPTTPPNQTPNPALQ
NTLKHNNSANTLPLESLCIQPNKSVWTIYLDAICINYDGNAFDAALMAMVLALKNDPTSF
EEPLLNDTLTIIMDDKAEFISVSHLGVGSTKHEDALSYCMEQAKERHAAVFKTIYSS
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaacaccctctctttctcatggacacaaccctctcaatctcacttccactttc
cctcatcggccatccctcacatactcgatacatcacccccaaacccgaaaaacagtacca
aacctcgacctccccgctctctgctcgcccaaattcaagcccggcccaccgacagacgaa
agccaggttctctcagataggctgaacgaggctcttgtcacgtacgtctgtctcccatcc
tatatacacctggcttatggtttgcatatctgccctggcctttccttgccaacccaacgg
accacgacgttcttcttcccaaccaccccaccaaaccaaacacccaatcccgccctccaa
aataccctaaaacacaacaacagcgccaacaccctccccctcgaatccctctgcatccag
cccaacaaatcagtctggacaatctacctagacgccatctgcataaactacgacggcaac
gcattcgacgctgctctgatggctatggtgttggctttaaagaatgacccaacatccttc
gaagaacccctcctcaacgacacactcaccatcatcatggatgacaaagcagaattcatc
tccgtctcccacctcggcgtcggatccacaaaacacgaagacgccttgtcctactgtatg
gaacaagcaaaggaacgacatgctgccgtgttcaaaaccatttactcttcttga
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