Cinclus cinclus (white-throated dipper): 134041165
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Entry
134041165 CDS
T10813
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134041165 (PCF11)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
134041165 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134041165
NCBI-ProteinID:
XP_062343498
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All DBs
Position
2:complement(36629288..36650454)
Genome browser
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQRMSPTPHMTVKPPHHTAVPSEKSKPSPSPPLHDVKIVNRDPRLNRM
GQHSSHTKDQSHRKEFLPSVTSQSESKGNKTAQAEKQNSTKSEKPKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRN
TEKKEKEEHKTCEHRLVGSRNKVINGAVQKQDTTAEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSS
KRNVKQEVRDPRRLKKAPEERPQETATQHSAKTSPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQSDEHQALVKSPHQRHRENWPAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKLDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGVEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPM
GPHGPSGGGLRFEGPHGPSGGGLRLEGPCGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFNGPAGPGAQSFPLRAAGHYFEEKGLQGPQYGNFSNMPMGSNQVSLMSAQAGPY
GQGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQT
NETSTQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNMMLDIVKQETEESCDSPKIKEEPDDTPPA
CVEENTPASTEIKTEPEESV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcatcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctcctgctgttcctgaaatacaaaagaatttgacacaggagcaa
ctaataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagaactggagctggaacagactaaagcacagttggctgtatctctcagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacgcatgtctcccacacct
catatgacagttaaaccacctcatcatactgctgtgccatctgaaaaaagcaaaccatcc
ccaagtcctccacttcacgatgtcaaaatagtgaatagggatcctcggcttaacaggatg
ggtcaacattcttctcatactaaagatcagtctcataggaaagaatttttacccagtgtg
accagtcagtctgagagcaagggaaacaaaacagcacaggctgaaaaacagaactcaaca
aagtcagaaaaaccaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcaccatctcctttgaaaaataagctgcctgatactaaagacagtaaa
agccaggaatgtgaaagcactaaggtttctgacatcagtaagcgggatccaagactgaaa
aggcatcttcaagataaatcagaggggaaggaagaggaggtcaaggaaaagaggagaaat
acagagaaaaaggaaaaagaggaacataagacatgtgaacatagactggtagggagcaga
aataaagtgattaatggtgctgttcagaaacaagacacaactgcagaggagtcagaaaaa
cagggtggaaaacaaggaagatcaagtagtagaaaacggtcacgatcacgctctcctaag
gcaagatcaccatctacacattctccaaaaagacgagagaggagatcacctaaaagaaga
cttcggagtttatctcctacttcatcgactcctaaaattggaaagatacgtcagataggc
cctaagcaatctcatgttgaagaaggcacacaagcagcaagagatgagagaaattctagt
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagccccagaagaa
agaccccaagagacagccacccagcattctgctaaaacttctccagatccaaaggagaat
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagagtgatgaacaccaagcacttgttaaatccccacaccaaagacat
cgggaaaactggcctgctgctaaaggaattctgtcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttaacatctggtgaaataacgcaagatgagttt
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctgtca
gatgcagaattaacatattatgaacataaagctaaattaaaaaggacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgagcaggcaaaagccaagcggggtgtacagtttgac
agaaaagaaccctttgcagaaagatcaagaaggcactctcctgtaagtggcactacaaga
ccttttgctgaaaacctgtcaccgcttgagagtcgacgaaggcttgaagaccagcgtgct
actaaaggagcaagaggttctgatccttatgacagctggggagaatcggatgaattcaga
gatgctctcagacaacaggggaaaagtacagcagagttccagaaattagatggagatgca
ctctgtaggtttgataaccgtgaagaaagacagcttcttggccaagctggtgttcgagag
gaaccaaggtcgccattcactgaacgtttcaaaagagctaggtatgaagatccagagaaa
gcaccatttccagaaagtccaggatcaagatttggaggtgttgaagcaaaacagaggata
agtgcactgatggaagacagacctctgtttgatggctcacctagaccgactgctgcgagg
gttggggtcgatggacaaggaagtccttttgttgatggtcctgctgctggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtggggaca
ggtgcatctcagtttgatggaccactggcaggagcagggggagctggagccttaagattt
gatgggccaccagggcagctggcaggggccctaagatttgaaggacccccaggccaagtt
ggtggaggaggtccgctacggtttgagggacctcttgggcctctgcgttttgaggggcct
gcagggcagcctgtaggtggtgctaggtttgaaggtcctggagttggtctcaggtttgag
gggcctcatggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgaggggccacatttacagccattg
gggccccatgggcaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccatcaggtggtgggctcaggtttgagggaccacatggaccatcgggc
ggtgggctgagattggaaggaccttgtggtcagccaggtctaggtcctaggttgattgat
ggaccagtacatcaaggagctggtggacttaggtttgatggtcctcttggccgtgctggt
ccgagatttgatggctgtcatggagctggatttgatggtcagcctggacagctgtctctc
ctgcaaagatttgatggaattcatgggcagcctggtccaaggttggcacctggccaacag
gcacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcc
tctaggtttgacttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccatatggacaaggtggtccatttgttgaacatcct
ggccagggctacaatggaccagctcatggaatgcaattccagagacctgatatatttgat
ggttcgcccggaccaaatttcaatgggccagctggcccaggagcacagagcttcccactg
agagcagctggacattacttcgaagaaaaaggtctccagggtcctcaatatggaaatttt
agtaatatgccaatgggaagtaatcaggtttctctcatgtctgctcaagcaggaccttat
ggccaaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggagct
ctttcccattcatatcctgataaccaccttggacaggttgatgtgaatgaattgtttgct
aaactgctgaaaacagggatcctcaagttgtctaaaactgattccacttcagcacaaaca
aatgaaacatcgacccagccgactgctgaagaagaagatgatgatcagaatgaagatcaa
aatgttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagtgtt
ataaatcgactgtacactggaattcagtgttactcctgtggaatgagattcactacttca
cagacagatgtttatgcagatcatttagattggcattatcgccagaaccggacagaaaaa
gatgttagcagaaaaattacacacaggagatggtactacagtttaacagactggatcgaa
tttgaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcat
gaagaggttgtgttgaaaacgcaggaagctgcaaaagagaaggagtttcagagtgtccca
gctggaccagctggagcagtcgagagctgtgaaatttgccaagagcaatttgaacagtac
tgggatgaggaagaggaagagtggcacctgaagaacgctatcagggtagatgaaaagatt
taccatccatcttgttatgaagactaccagaatacatcatcattcgattgcacaccatct
cccagcaagactccttcagaaaatccattaaatatgatgttggacattgttaaacaagaa
acagaagagtcctgtgactcacctaaaatcaaagaagaacctgatgacacccctcctgcc
tgtgtagaagagaatacacctgcatctacagaaatcaaaacagaacctgaggagtctgtt
taa
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