Cinclus cinclus (white-throated dipper): 134041266
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Entry
134041266 CDS
T10813
Symbol
PCDH17
Name
(RefSeq) protocadherin-17
KO
K16499
protocadherin delta 2
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccic04515
]
134041266 (PCDH17)
Cell adhesion molecules [BR:
ccic04515
]
Cadherins
Protocadherins
134041266 (PCDH17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
134041266
NCBI-ProteinID:
XP_062343743
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Position
2:61203565..61289406
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AA seq
1180 aa
AA seq
DB search
MYLSICCFFFCWAHALSLKNLNYSVPEEQGAGTVIGNIGRDARLAAGAAGGGMLPSERGV
PGGGPGGSRGPKSTFRVLENSAPHLLDVDGESGLLYTKQRIDREALCRRSAKCQLSLEVF
ANDQEICMIKVEIQDLNDNAPSFPSDQVDMDISENAAPGTRFPLTSAHDPDAGDNGLRTY
LLTRDDYGLFSLDVKSRGDGTKFPELVIQKPLDREEQSHHTLVLTALDGGDPPRSGTVQI
NVRLIDSNDNSPIFEAASYVVELPENAPLGTAVIDLNATDADEGTNGEVLYSFSGYAPER
VRDLFSIDPQSGLIRVKGNLDYEESGLIEIDVQARDLGPNPIPAHCKVTVRLIDRNDNAP
TIGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGSGGGPGAVPFTLEENY
DNFYTVVTDRPLDREAQDEYNVTIVARDGGNPPLNSTKSFSVRILDENDNPPRFSKSLYV
LQVPENNIPGEYLGSVLAQDPDLGQNGTVSYSILPGHVGDVSIYTYVSVNPTNGAIYALR
SFNYEQTKHFEFRVLAKDSGSPHRESNATVRVTVLDVNDNAPLIVLPALINDTAELQVPR
NAGVGYPVGTVRALDSDFGESGRLTYEIVEGNEEHLFEMDPTSGEIRTLHPYWEELSPVA
ELVVKVSDHGKPSLSAVAKLIVRALAGPLPEAGEPQVNGEQHRRPHWDLSLPLIVTLSTV
SIILLAAMITIAVKCKRENKEIRTYNCRIAEYSHPQLGGGGGSGGGGGGSGSGGGKGKKK
KISKNDIMLVPSEGEDSRGPLNVMNVVSSPSLATSPMYFDYQTRLPLSSPRSEVMYLKPA
SNNLTVPQGHVGCHTSFTGQGTNASEAPPSRMSIIQTDNFPAEPNYMGSRQQFVQSSSTF
KDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSVREALKMKTTSTKSQPLEQEQEECVN
CTDECRVLGHSDRCWMPQFPAASQAENADYRTNVFVPTVEANVETETYETVNPTGKKTFC
TFGKDKREHTILIANVKPYLKAKRALSPLLQEVPSASSSPTKTCIEPCTSTKGPLDGCEV
KSGALAEPSSQYLSTDSQYLSPSKQSKDASFIASDQMARAFADVHSRVSRDSSEMDSVLE
QLDRSARDLGRESVDAEEVVREIDKLLQDCRGSDPVAIRK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttccatttgttgcttcttcttctgctgggctcacgccctttcgctgaagaac
ctgaattactcggtgccggaggaacagggagcgggcacggtcatcgggaacatcgggcgc
gatgctcggctggcggcaggcgcggcgggaggcgggatgctgccctcggagcgtggcgtt
cccggtggcggccccggcggcagccgcggccccaagtccacctttcgggtgctggagaat
tcagccccgcacctcctggacgtggacggggagagcgggctgctctacaccaagcagcgc
attgaccgtgaggcactgtgccggcgcagcgccaagtgccagctgtccctcgaggtgttt
gccaatgaccaggaaatctgcatgatcaaagtggagattcaggacctgaacgacaatgca
ccatcattcccctctgaccaagtggatatggacatctccgaaaatgctgcgccaggcacc
cgcttccccctcaccagtgcccatgacccagatgctggggacaatggtctgcgcacctac
ctgctcactcgtgatgactacggcctcttctccctcgatgtgaagtcccgtggtgatggc
acaaagtttccagagctggtcatccagaagccattagaccgtgaggagcagagtcaccac
accctggtgctgacggcactggatggtggtgacccaccacgctcagggacagtgcagatc
aatgtgcgcctcattgactccaatgacaacagccccatctttgaagcagcctcctatgtg
gtagagctgccagagaatgccccactaggcacggcagtcatcgacctcaatgccactgat
gccgatgagggtaccaatggagaggtgctctactccttcagcggctacgcacctgagcgt
gtccgtgacctgtttagtattgacccacagagcggcctcatccgtgtcaagggcaacctg
gactatgaggagagtggcctcattgagattgatgtccaagctcgggacctggggcccaat
cccatccctgctcattgcaaggttactgtccgcctcattgaccgcaatgacaatgctccc
accattggctttgtctccgttcgccagggagctctgagtgaggctgccccaccaggcact
gtcattgccctggtgcgtgtcaccgaccgtgactcaggcaagaatgggcagctccagtgt
cgggtgctgggcagtggtggcgggcctggtgctgttcctttcaccctggaggagaactat
gacaacttctacactgtggtcaccgaccgacccctggaccgtgaggcacaggacgagtac
aatgtgaccattgtggcacgtgatgggggcaatcccccacttaactccaccaagtcattt
tctgtccggatccttgatgagaacgacaacccaccccgcttcagcaagagtctttatgtg
ttacaggtgcctgagaacaacatccctggagagtaccttggctcagtcttggcccaggat
cctgacttgggccaaaatgggacagtgtcttactccattctgcctgggcatgtgggagat
gtctccatatacacctatgtctctgtcaaccccacaaatggtgctatttatgccctgagg
agcttcaattatgagcagacaaagcactttgagttccgcgtgctggccaaagactcgggt
tcaccccaccgtgaaagcaatgccacagtgcgtgtcaccgtgctcgacgtcaacgacaat
gcgcccctcattgtcctgcctgccctcatcaatgacactgctgagctgcaggtgccacgc
aatgctggggtgggctaccccgtgggcaccgtccgcgccctggacagtgactttggggag
agtgggcgcctcacgtatgaaattgtggaaggcaatgaggagcacctctttgagatggac
cccactagtggtgagatacgcaccttgcacccctactgggaggagctcagccctgtggct
gaactggtggtaaaagtcagtgaccatggcaagcccagcctctctgctgtggccaagctc
atagtcagggccttggcggggcccctgcccgaggctggtgagccacaggtgaatggcgag
cagcatcggcggccacactgggacttgtcactgccgctgattgtgacactgagcactgtc
tccatcatcttgctggctgccatgatcactattgctgtgaagtgcaagcgagagaacaag
gagatccgcacctataattgtcgcattgccgagtatagccaccctcagctgggaggaggg
ggaggcagtggcgggggaggaggaggcagtggcagtggagggggcaagggcaagaagaag
aagatcagcaagaatgacattatgctggtgcccagtgagggcgaggacagccggggtccc
ctcaatgtcatgaacgtggtgagcagcccatccctggccacctcacccatgtactttgac
taccagacccgcctgcccctcagctctcccaggtctgaggtgatgtacctgaagcccgcc
tccaacaacctgactgtaccccagggacatgtgggctgccacaccagcttcacagggcaa
gggactaacgccagcgaggctcccccgagccggatgtccataattcagacagacaatttt
cccgcagagcccaattacatgggcagcaggcagcagtttgttcaaagtagctccacgttc
aaggatccagaaagagccagcttgagggacagcgggcatggggacagtgatcaggctgac
agtgaccaagacactaacaaaggctcctgctgtgacatgtctgttagggaggcactcaag
atgaaaactacttcaactaaaagccagccacttgaacaagaacaagaagaatgtgttaac
tgcacagatgaatgcagagtgcttggtcattctgacaggtgttggatgccacagttccct
gcagccagtcaggctgagaatgcagattatcgcacaaatgtctttgtacccacagttgaa
gctaacgttgagactgaaacatatgaaactgtgaatcccactgggaaaaagactttttgt
acatttgggaaagacaagagagagcacactattctcattgccaatgttaaaccttactta
aaagccaaacgtgccctgagtcctctgcttcaggaggttccctcagcatcgagcagccca
accaagacatgcattgagccttgcacctcaacaaaaggaccactggatggttgtgaagtg
aaatcaggagccttggctgaaccgagcagccagtacttgtcaactgacagtcagtatcta
tcgcccagtaaacagtcaaaggacgcttccttcattgcatcagatcagatggctagggcc
tttgcagacgtgcattcccgagtgagccgagactcgagtgagatggactctgttctggag
cagttagatcgttcagcccgggatctaggcagggagtcggtggatgccgaggaagttgtg
agagaaatagacaagctcttgcaggactgtcggggaagcgaccctgtggccatcagaaag
tga
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