Cinclus cinclus (white-throated dipper): 134041436
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Entry
134041436 CDS
T10813
Symbol
NUP98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03013
Nucleocytoplasmic transport
ccic05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134041436 (NUP98)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
134041436 (NUP98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134041436 (NUP98)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134041436 (NUP98)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134041436 (NUP98)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
134041436 (NUP98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
ZapB
Motif
Other DBs
NCBI-GeneID:
134041436
NCBI-ProteinID:
XP_062344216
LinkDB
All DBs
Position
2:117386270..117429923
Genome browser
AA seq
1807 aa
AA seq
DB search
MFNKSFGTPFGGSTGFGTTSTFGQNAGFGTTSGGAFGTSAFGSTNNTGSLFGSTQTKPGG
LFGSTTFNQPATSSTSTGFGFGTSTGTSNSLFGTTSTGGSLFSSQSNAFAQNKPAGFGNF
GTSTSSGGLFGTTNTASNPFGSTSGSLFGPTSFTAAPTGTTIKFNPPTGTDTMVKSGVST
NINTKHQCITAMKEYESKSLEELRLEDYQANRKGPTNPVGAGATAGLFGSSTATSSTATG
LFGSSTTNTGFSYGQNKTAFGTSTTGFGTGTTGGLFGQQSQTTSLFNKPFGQATTTQNTG
FSFGGTSTLGQPNTNTMGLFGVTQPSQPGGLFGTAANTNAGTGFGTGTGLFGQANTGFGV
GGSTLFGNKPAGFGATTTSAPSFGTTTGGGLFGFGANTAGNSLFGNKPAAGTLGTGLGTG
FGTALGAGQTSLFGNTQPKLGGTLGTGAFGAPGFNTSTATLGFGAPQPAVALTDPNASAA
QQAVLQQHLNSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRP
ATRVRPKALQSAGSAKSQLFDGLDDDEPSLSNGAFMPKKSIKKLVLKNLSSSNLFSPVSR
ENEDLASPSEYPENGDRFFLSVPPEENHRQDGEREEEEEAHEVTRFYTNPIAKPIPQSLE
GSGHKQHSAVDDTIVALNMRAALRNGLEGSSEDASFQEDSLQEEWDKEAEPGQQLHPAGI
VLTRAGYYTIPSLEELARLTNDRKECIVTDFTIGRRGYGSIYFEGEVNLTNLNLDEIVHI
RRKEVIVYPDDERKPPIGEGLNRRAEVTLDGVWPTDKTSRCLIKSPERLAEMNYEGRLEA
VSRRQGARFKEYRPETGSWVFKVAHFSKYGLQDSDEEEEDHPSKVDTKKLKTMPVPPPGH
LPPQQMALNGKPAPPAQPLELEQLGRLVELDSDMADITQEPAQEPLAEDTLAEEQEAVPA
STHIASSRGINPYVLQIMKASLLADDDDDLDLILDYPGKHPVKMDTSQEICSPRLPISKS
QGQKRHSGALPLKRSSCFSPSAAGLLQSKFASILSQAPSAAVADTKAPRTLGSPPCAALW
SPLASAFSVPAAVPEVQVRTVGARRQRGLVPLERSITYGKGKLLMDMGLFMGRSFRVGWG
PNWTLVNCGDQLSGSSEREDAQLEPVEYGFLPTPAAPKSLTESPFKVHVEKLSLEQWKMD
RDKELYLTPLEIKLKHSTVHMDEPCPLLAPNPGVSAIHDYADWARKASEDPTMAETVVKH
WCLAWTLCEAVWGKLKELEASLEEPSEYVLALERRRAFSRWLSETAAARIEDEVALSRHG
SHVEAVFSCLTGKRIGEACRLAQQAGDHRLALLLSQLAGSQPVRDLLTLQLVDWHRLHSD
RFMQEERLRLFALLAGKPVWQLSERISVNVCSLLDWKRCVAVHLWYLLPPTASISRALAM
YEAAFQNTSECEKYACCPLPSYLEDSGCVIEEDDNGGRPLRDVCFHLLKLYSDRSYELDQ
LLDPRSVTSDPLDFRLSWHLWEVLRALNYCHLSQQSWGVLNTSYAAQLESEGLWEWAVFV
MLHEPDTHIREQAVRELLGRHCALADTPESWAKETFLTQRLCIPPHWIHEAKAVRARMEG
DKHKEALFLFKAGHWNQCHKLVVRHLASDAIINENYKYLKGFLEDLAPPERSALIQDWEL
AGLVYLDYIRVNEMLDRIQQLDVSTYELERLHTKVTSLCNRIEQLQCHNAKDRLAQSDMA
KRVANVLRVVLSLQQGPEPGPEAAEPRVPLRLLAPHIGRLPMPEDYALEELRGLTQAYLR
ELALAAH
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaatcctttggaactccgtttggaggcagcaccggctttgggacaacttca
acttttgggcaaaatgccggctttggtacgaccagcggaggcgccttcgggacatcggcc
ttcggctccaccaacaacaccggcagcctgttcgggagcacgcagacaaagccaggaggg
ttgtttgggtcaaccacgttcaaccaaccagccacctcctccaccagcactggctttggg
tttggaacatccactgggacatcaaacagcctctttggaaccaccagcactggtggaagc
ctcttctcatcccagagtaatgcctttgcacagaacaaaccagccgggtttggaaacttt
ggtacgagcactagcagtggagggctctttgggaccaccaacaccgcttccaaccccttt
gggagcacatctggctctctctttggcccaaccagctttactgctgctccaactggcacg
actattaaatttaatcccccaactggcacggacaccatggtgaaatcgggagtgagcacc
aacatcaacaccaagcaccagtgcatcactgccatgaaggagtacgagagcaagtccctc
gaggaactccgtctggaagactaccaggcaaacaggaaagggcccacgaatcctgtagga
gcaggagcaactgctggcttgtttggctcttccactgccacgtccagcacagccacagga
ctttttggctcttctactaccaatacaggcttttcctatggacagaataaaactgctttt
ggaaccagtaccaccggctttggcaccggcaccaccgggggtctctttgggcagcagtcc
cagaccacgagcctgttcaacaaaccctttggccaggccaccaccacgcagaacaccggc
ttctccttcgggggcaccagcaccctgggccagcccaacaccaacaccatgggtctcttt
ggggtcacccagccctcgcagcctggaggcctttttgggacagctgcaaatacaaatgct
gggactggatttggaacaggaactggcctttttggacaagccaacactggatttggtgtt
ggtggttcgaccctgtttgggaacaagcctgctggatttggagccaccacaaccagcgct
ccctcgttcgggaccaccacgggcgggggcctcttcggttttggtgccaacactgctgga
aatagcttgtttggaaataagcctgcagctgggactctgggcactggacttggaacaggg
tttggaacagctctgggggcaggacagacctccttgtttgggaacacgcagccaaagctg
gggggaacgctggggacaggagcgtttggagcgccaggattcaacacctccacagccacc
ctgggctttggggcccctcagcctgctgtagctctgacagaccccaatgcctctgcagcc
cagcaagctgtcctccagcagcacctcaacagcctgacctactcaccctttggggactcc
ccgctcttcagaaaccccatgtcagacccaaagaagaaggaggagaggctgaagccaacc
aacccagcagcccagaaagccttgacaacccccacccactacaagctgaccccacgccct
gcgaccagagtgcgacccaaggcactgcagtcagcgggctcggccaagtcccagctcttt
gatgggctggatgatgatgaaccctccctgtccaatggagccttcatgccaaagaagagc
atcaagaagctggttctgaagaacctcagcagcagcaacctgttctccccagtgagccga
gagaacgaggacctggcgtcaccttcggagtacccagagaatggggacaggttcttcctg
tcggtgcctcccgaggagaaccacaggcaggacggggagcgggaggaggaggaggaggcc
cacgaggtgaccaggttttacaccaatcccatcgccaagcccatcccgcagagcctggag
ggcagcgggcacaagcagcactcggccgtggacgacaccatcgtggcgctcaacatgcga
gcggcgctgcgcaacgggctggagggcagcagcgaggacgcctccttccaggaggattcc
ctgcaggaggagtgggacaaggaggccgagcccgggcagcagctgcatcctgcagggatt
gttctgacacgagctggctactacaccatcccatccctggaggagctggcccggctgacc
aacgacaggaaagaatgtattgtgacagacttcaccatcggccgcaggggttatggatcg
atttactttgaaggagaagtcaatctaacaaacctaaacctggatgagatcgtacatatc
cggagaaaagaagtcattgtttaccctgatgacgaaagaaaacctcccattggggaaggg
ttaaacaggcgggccgaggtgaccctggacggggtgtggcccacggacaagacatctcgg
tgcctgatcaagagccccgagcggctggcagagatgaactatgagggccggctggaggcc
gtgtcccgcaggcagggcgcgcgcttcaaggagtaccgacctgagaccggctcctgggtc
ttcaaggtagcacacttttccaagtatggcttgcaagattcagatgaggaagaggaagat
catccttcaaaagtggacaccaagaagttaaagaccatgcctgtgccacccccagggcac
ctgcccccccagcagatggctctgaatggcaaaccagcgcccccagctcagcccctggag
ctggagcagctgggcaggttggtggagctggacagtgacatggcagacatcacccaggag
ccagcccaggagcccctggcagaggacaccctggctgaggagcaggaggcggtgccagcg
tccacgcacatcgcgtccagccggggcatcaacccctacgtgctgcagatcatgaaagct
tccttgcttgctgatgatgatgatgacctggatttgatcctggattatccagggaagcat
cctgtcaagatggacacttcccaagagatctgttccccaaggcttcccatttcgaaatca
caaggacagaaaagacactcaggtgcccttccgctgaaacgttcttcgtgcttctcccca
tcagctgctgggctgctgcaatccaagtttgccagcatcctttcccaagcaccgagtgca
gctgtggcagacaccaaggccccgaggactttgggcagtcccccctgtgctgccctgtgg
tcccctctggcctcggcgttctcggtgcccgcggcggtgcccgaggtgcaggtgaggacg
gtcggggcccgccggcagcgcgggctcgtccccctggagaggtccatcacctatggaaaa
gggaagctcctgatggacatggggctgttcatgggccgctcgttccgcgttggctgggga
cccaactggacgctggtcaactgtggagatcagctgagcggctcgagtgaaagggaggat
gctcagctggagcccgtggaatacggattcctgccgactcccgccgctcccaaatcactc
acagagtcccctttcaaagttcatgtggaaaagttgagcttggaacaatggaagatggac
agagacaaggagctgtatctcacccctctggagataaagctgaagcacagcactgtccat
atggatgagccctgtcctctcctggcccccaaccctggagtctctgctatccatgactat
gctgactgggccaggaaagcatctgaggatcccactatggcagagaccgtcgtgaagcac
tggtgcttggcctggacactgtgtgaggccgtctggggtaagctgaaggagctggaggcc
agcctggaggagcccagcgagtacgtgctggctctggagcgccgcagggcgttctcgcgc
tggctgtcggagacggcggccgcgcgcatcgaggacgaggtggccctgtcccgacatggc
agccacgtggaggccgtgttcagctgcctcacggggaagaggatcggcgaggcctgcagg
ctggcacagcaggcaggtgaccaccggctggcgctgctgctgtcgcagctggccgggagc
cagcccgtgcgggacctgctgaccctgcagctcgtggactggcaccgcctgcacagcgac
cgcttcatgcaggaggagcggctgcgcctcttcgccctgctggccgggaagccggtgtgg
cagctctccgagaggatcagcgtcaacgtgtgctcactgctggactggaagcgctgcgtg
gccgtgcacctctggtacctgctgccccccacggcctccatctccagggctctggccatg
tacgaggctgcattccagaacacctcagagtgtgaaaaatacgcctgctgtcctctgcct
tcttacctggaagattctgggtgtgtcattgaagaagatgacaatggaggaaggcctctg
agagatgtctgcttccacttgttaaagctctacagtgacaggtcctatgagctggaccag
ctgctggatcccaggagtgtcacctctgatccactggatttccgcctcagctggcacctg
tgggaagtgctgcgggccctgaactactgccacttgtcccagcagagctggggggtgctg
aacaccagctatgctgcccagctggagagtgaggggctgtgggaatgggctgtgttcgtg
atgctgcacgagcctgacacacatatccgggagcaggccgtgcgggagctgctgggccgg
cactgtgccctggctgacacccccgagtcctgggccaaggagaccttcctgacacagcgc
ctctgcatccccccacactggatccacgaggccaaggcggtgcgggccaggatggaggga
gacaagcacaaagaggccctttttctgttcaaggctgggcactggaaccagtgccacaag
ctggttgtcaggcacttggcctcagatgcaattatcaacgagaactacaagtacctgaag
ggattcctggaagacctggcacccccggagcgcagcgcgctcatccaggactgggagctg
gcagggctggtctacctcgactacatccgtgtgaatgagatgctggacaggattcagcag
ctggatgtttccacctacgagctggagcggttacacaccaaagtgacatccctgtgcaac
aggatagagcagctgcagtgccacaacgccaaggaccgcctggctcagtcagacatggcg
aagcgcgtggccaacgtgctgcgggtggtgctgagcctgcagcagggccccgagccgggc
cccgaggcggccgagccgcgcgtgcccctgcggctgctggccccgcacatcggccgcctg
cccatgcccgaggactacgcgctggaggagctgcgcggcctcacccaggcctacctgcgt
gagctggccctggctgcacactga
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