Cinclus cinclus (white-throated dipper): 134041521
Help
Entry
134041521 CDS
T10813
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134041521 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccic04121
]
134041521 (TRIM54)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
134041521 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_5
zf-B_box
zf-RING_2
TRIM_CC
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
CYP38_PsbQ-like
RHH_9
Sina_RING
Zn_ribbon_FGT1_2
DUF5799
CoiA_N
Motif
Other DBs
NCBI-GeneID:
134041521
NCBI-ProteinID:
XP_062344309
LinkDB
All DBs
Position
3:complement(260025..263081)
Genome browser
AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEENGRRQKQHVGLRFDALYGILEERKKELLQSIAAEQE
AKLQRVRGLIRQYGDHLEASSKLVESAIQAMEEPQMALYLQHSKELLKKITDMSKASMSS
CPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEDEGDGPGDGSEAATDEERLDSLEVP
EAAEDVGLRQKPASSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtagggctgaagccgcttctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtctcggggctccagcgcggtgccgtcgggcgggcggttccggtgcccgtcg
tgccggcacgaggtggtgctggaccggcacggggtgtacggattgcagcggaacctgctc
gtggagaacatcatcgacatctacaaacaggagtcggcccgacccctccatgccaaggct
gagcagcacctcatgtgtgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctgtgcaaggtgtttggggcgcacaaggactgcgaggtg
gccccgctgccagctgtctaccagcgccagaagagcgagctcagcgacggcatcgccatg
ctggtggcggggaacgaccggatccaggccatcatcacacagatggaggagatctgccac
accatcgaggagaatggccggcggcagaagcagcacgtggggctgcggttcgacgcgctg
tacgggatcctggaggagcgcaagaaagagctgctgcagagcatcgcggccgagcaggag
gccaagctgcagcgtgtccgtgggctcatccgccagtatggagaccacctggaggcctcc
tccaaactggtggagtcagccatccaggccatggaggagccccagatggccctgtacctg
cagcactccaaggaactcctgaaaaagatcacagacatgtccaaggcatcaatgagcagc
tgccctgagcctggctacgagaatatggaccacttctccatcaatgtggattatgtggct
gagatgctgaggaccattgagttccagacagaaccactgggtgaggatgagggtgatgga
cctggggacggcagtgaggctgcaacggatgaggagcggctggacagcctggaggtgccc
gaagctgctgaagatgtggggctgaggcagaagccagcgagttctccccatggtcagcac
tga
DBGET
integrated database retrieval system
