Cinclus cinclus (white-throated dipper): 134041557
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Entry
134041557 CDS
T10813
Symbol
FDFT1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic00100
Steroid biosynthesis
ccic01100
Metabolic pathways
Module
ccic_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
134041557 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ccic01006
]
134041557 (FDFT1)
Enzymes [BR:
ccic01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
134041557 (FDFT1)
Prenyltransferases [BR:
ccic01006
]
Terpene biosynthesis
Squalene/phytoene synthase
134041557 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
HAUS4
Motif
Other DBs
NCBI-GeneID:
134041557
NCBI-ProteinID:
XP_062344376
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All DBs
Position
3:3338614..3350495
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AA seq
418 aa
AA seq
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MELLRKWLGHPEDIYNLLRFKMGGYRAVMPRMDTDSLGCGLRTCYRYLNQTSRSFAAVIQ
ALDGELRHAVCIFYLVLRALDTVEDDMSIPLDVKVPMLHEFHSHLYQPDWKYTESKEKDR
QVLEDFPTISMEFRNLSKVYQDVISDICHKMGVGMAEFLEKKVDSQREWDKYCHYVAGLV
GIGLSRLFSASELEDSIVGQDTDLANSMGLFLQKTNIIRDYLEDQLEGREFWPREVWSRY
AKKLSDLAKPENIDVAVQCLNELITNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIAT
LAACYNNQQVFRGVVKIRKGQAVTLMMDATNIQAVKGIMYQYVEEIYQKIPSTDPSSNKT
QQVIASIRAMSLPGSPMASRHHYSPIYLSCAMLLAALSWQYLSTLSKATEEYVQAGDN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggagctgctgcggaaatggctgggccaccccgaggacatctacaacctgctgcgcttc
aagatgggcggctaccgcgccgtcatgccgcggatggacacggactcgctgggatgtggc
ctccgcacctgctaccgctacctcaaccagaccagccgcagcttcgccgccgtcatccag
gctctggacggagagctgcgacatgcagtctgtatattctacctagttctccgtgccctg
gacactgtagaggatgacatgagcatccccttggatgtcaaggtcccgatgctacacgag
ttccactcccatctctaccagccagactggaagtacacagagagcaaggagaaggacagg
caggtgctggaagacttcccaacgatctccatggagttcagaaacctgtccaaggtctac
caagatgtgatttcagatatttgccacaagatgggtgttgggatggcagagtttttggaa
aaaaaggtggattctcagcgtgagtgggataagtattgtcactacgttgctgggctggtg
gggattggcctttcccgtctcttctctgcatcagagctggaagattccatcgtggggcag
gacacagatctggcaaactccatgggcctcttcctacagaaaaccaacatcatccgtgac
tatctggaggaccagctggagggaagggagttctggcccagagaggtttggagcagatat
gccaagaagctctcggaccttgccaagccagagaacatcgatgtggccgtgcagtgcctc
aatgagctcatcaccaacgccctccaccacgtccctgacgtcctcacctacctgtcccgc
ctcaaaaaccaaagtgtcttcaacttctgcgctatcccccaggtgatggccatagccacg
ctggctgcctgctacaacaaccagcaggtgttcaggggggtggtgaagatccgcaagggc
caggctgtcaccctcatgatggatgccacgaacatacaagctgtcaaaggcatcatgtac
cagtatgtggaagagatctaccagaagatcccgagcacggacccctcgtccaacaagacg
cagcaggtgatcgcctccatccgtgccatgagcctgcccggcagccccatggcctcccgc
caccactactcccccatctacctgtcctgtgccatgctcctggcagccctgagctggcag
tacctcagcaccctctccaaagccaccgaggagtacgtgcaggcaggggacaactga
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