Cinclus cinclus (white-throated dipper): 134042217
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Entry
134042217 CDS
T10813
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134042217 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134042217 (MSH2)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134042217 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
134042217
NCBI-ProteinID:
XP_062345346
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Position
3:97363692..97408180
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AA seq
936 aa
AA seq
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MAVEPPRDAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSATLPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTAFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLTDISSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKNAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSAINDEYIRNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALAEQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGRSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVAL
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggacgccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtactctcgctgcccgagaagcccgacacaaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggaactcagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaacgactgg
tatttggcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgatatgtccacagccatcggggttgtgggggttaagctgtctgctgctgatgga
cagagagtggtaggagtgggctatgtggacactacactgagaaaattgagtgtttgtgag
ttcccagataacgatcagttctcaaatcttgaagctctactggttcagctgggcccaaag
gagtgtgtgctgccaggaggagacactgcaggagagatgggaaaactgagacaagtcatt
cagaggggaggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaatcgcttgttgaaatcaaaaaaagaagagcagctgaatagtgcaaca
ctgccagagatggaaaagcaggttgctgtttcgtctttgtcagccgttatcaagttttta
gagttgctgtcagacgagtctaattttggacaatttgaactgactgcttttgatcttagt
caatacatggttctagacaatgcagctgttcaagccctcaaccttttccagagttctgtg
gaaaatgcaaatactgcacaatctctagctggtttactgaataaatgcagaacccctcaa
ggacaaagacttgttaatcagtggatcaaacaaccacttatggacaagaccagaattgag
gaaagattgaatttggttgaagcttttgtaatggatccagagttacgccagtgccttcaa
gaagatctgttacgtcgctttccagacctcaaccggttggcaaagaaatttcagagacaa
gcagcaaacttacaagactgttaccgaatgtaccaggctatcaatcaactgcctaatgtt
gtacaagcactagaaaagcatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttactgatatctcctctgacttctcaaagtttttggagatgatagaaacaaca
ttggacatggaaaaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcaatccttattaaag
aatgcagccaaagaactaggtctggaagctggcaaaagtatcaaactggagacaaattcg
cagtttggacatcacttcagggtaacttgtaaggaggaaaaagctctccgtaacaattcg
aaatatggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagc
gccatcaatgatgaatatataaggaacagggaagagtatgaagaggctcaagatgcaatt
gttaaggaaatcattaatattgcttcaggttatgcagagcccattcagaccatgaatgat
gtgatagctcagctggatgccattgtcagctttgcccacgtgtcaaatggagccccggtg
ccttacgtccggcctgtcattctggagaagggacaaggcaggattgtcctgaaaggtgcc
aggcatccctgcatcgaagtgcaggatgaggtggccttcatccccaatgacattacattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaaca
tacatccgacagacaggcgtgattgttctcatggcccaaattgggtgttttgtgccgtgt
gagtctgcagaaataaccattgtggattgtatcctggctcgggtgggagcaggagacagc
cagctgaaaggagtgtctactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcaactgaaaactccctgataatcatcgatgagctgggaagaggaacttctacctac
gatggttttggcttagcgtgggctatctcagaatacattgccagcaaaatctgtgggttt
gccatgtttgctacacacttccatgaactcacagctcttgctgaacaagtgccaacagta
aataacctccatgtcactgctctgaccagtgatgacacactgacaatgctttatcgtgtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagcagagttggcagctttccca
aaacatgtgatagaaagtgcaagagagaaagctttggagctggaagagtttcaaaacatt
ggcaggtccaaggaatctgaaggagaaccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagaagacatcaaagtcaagttgaaacagctgagaaatgatgttctggcaaag
aacaacagttttgtgaatgaaataatttctcgaacgaaagttgcattgtga
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