Cinclus cinclus (white-throated dipper): 134042517
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Entry
134042517 CDS
T10813
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134042517 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134042517 (HBS1L)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134042517 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
134042517
NCBI-ProteinID:
XP_062345979
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Position
3:complement(55670852..55728827)
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AA seq
687 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPATFAEPLEEEYG
YEGTDSAADCFTPTHQLTEVDRARLNSCLDQMREVLAESIPEQAMVQAVLDTKFDVQKAL
DLVLSQGSKQNAKTKNKDAVILAKTTKGKTMDSQSARMESEIVPKVTKMTVSGKKQSMGF
EVPCAIAEENGHPNTPQKGLLPEDASVASGVLEAVSKSTLSSQVVQVSEEQNMVPTPAKK
SSKAKPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETPTKIITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQSSDLTQWYKGNCLLEQIDSF
KPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPITKG
FPVLLHYQTVSEPATITRLLSVLHKSTGEVTKKKPKFLAKGQNALIELQTQRPVALELYK
DFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgtccgaggatataactacgacgaagactttgaagatgatgat
gtatatggccaatcagtagaagatgattattgcatttctccttcaacagcagcccagttt
atttactccagacgagacaaaccagccacatttgctgagccattagaagaagaatatggc
tatgaaggtactgattctgctgctgattgttttacacccactcatcagttgactgaagtt
gatagagcccgtcttaattcatgccttgatcaaatgagagaagttttggcagagtccata
ccagagcaagcaatggtgcaagcagtactggacactaaatttgatgtacaaaaggctttg
gatcttgtgctttcacaaggcagtaagcaaaatgcgaagaccaagaataaggatgctgtg
attttagcaaagactacaaaaggaaaaacaatggattcccagtcagccagaatggaatct
gaaattgtgccaaaagttaccaaaatgacagtgtctggaaagaaacaatctatgggattt
gaagttccatgtgcgattgctgaggaaaatggccaccctaatacacctcagaaaggactg
ttacctgaagatgccagtgtagcttctggggtacttgaggctgtctcaaaatctactctt
tcatcccaagtagtgcaggtttcagaagagcagaatatggtgcctactccagcaaaaaag
tcaagcaaggcaaaaccccaaatagatgtgaaagcagagttggagaagagacaaggagga
aagcaactgctgaatttggtggtaataggacatgttgatgcaggcaaaagtactttaatg
ggtcatttgctctaccttttgggaaatgtgaacaaaagaactatgcacaaatatgaacag
gagtctaaaaaagctggtaaagcttcatttgcctatgcatgggtcttggatgaaactggt
gaagaaagagaaaggggagtgacaatggatgtgggcatgaccaaattcgagacaccaact
aaaataattacactgatggatgctccaggccacaaagatttcattccaaatatgatcaca
ggagctgcacaggctgatgtggcaattttggttgtggatgccagccgaggagagtttgag
gcaggatttgagacgggtggacaaactcgagaacatggattattagtgcgctctcttgga
gtgacacagttggctgttgcagtcaataaaatggatcaggtcaattggcaacaggaaaga
tttcaggaaattacgagtaagcttggccaatttcttaagcaagccggctttaaggaatca
gatgtggcttatatcccaacaagtggccttggtggtgaaaatctggtcacaagaggtcag
tcaagtgacctcacacaatggtataaaggaaactgtttgttagagcaaattgattctttc
aagccaccacagagatcagtggataaaccatttagactgtgtgttgctgatgtttttaaa
gaccaaggttcaggattttgtgtgactggtaaaatagaagcaggctatattcaggttgga
gaacgacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcac
gatgagccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgtgggctgtgtattttgtgatcccaaggaacccattaaagtt
tgcactcggttcagagctcgggttctcatcttcaatattgaggttccaatcactaaagga
tttcctgtgcttttacactatcaaacagtaagtgaacctgctactattacaagactgttg
agtgtcctgcacaaaagcaccggtgaagtgacaaagaaaaaacctaagttcttggctaaa
ggccagaatgctctaatagaactacaaactcaaagacctgttgctctagagctgtacaaa
gattttaaagagctggggaggtttatgttacgctacagtggttccactattgctgcagga
gttgttacagagattaaagaatga
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