Cinclus cinclus (white-throated dipper): 134042541
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Entry
134042541 CDS
T10813
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134042541 (SCAF8)
Spliceosome [BR:
ccic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
134042541 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134042541
NCBI-ProteinID:
XP_062346029
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All DBs
Position
3:58559840..58648328
Genome browser
AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENPEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDIAEEEIFDQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQDTMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPMSKSESDDKGSHLTD
LQISSSENNRSVQSDVSSSSGLVGGVQPPSVSSSSGLTGEGPSPTVSSSSGLAGGVQPPS
VSSSSGLVGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPN
VSSSSGLLAGVHPPSVSSSPGLLTGMQPPSVSSSSGVLAGVQPPSVSSNSGLLLMPPPNV
STSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHLNISNQRMPGMPLIDIRPGLMPHSPG
PRFPLMQPGMPPQRTLPPPAILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDSIS
NAEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGLGRPPV
DGREHFARPHIDMRENFGRPSIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMPNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQMQDD
PELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaggcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagagtacaaggtg
cctggtctttatgtcattgactcaattgtgagacagtcccggcatcagtttggacaagaa
aaggatgtatttgcgccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcggcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacgccaggt
acacctgtgactccagttaccccagccaatgtggcacagagtttacctgatccttgggta
tctcagattgctaacacagacacccttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcgctacttcaagccctggatgccggtcttgtcgtccagttacaggccctcacagcacag
ctcacagctgcagctgctgctgctaacacacttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagagcct
aaaaaggaaactccctcttcccaattgccattagtaccagaatctgtgaacaactcactt
tttcaccagctagctgaacagctacaacagcaaaatttagaacatctcagacaacagctt
ctggagcagcagcagcctcaaaaggcaagccctgaggagaatccagaaggaaattttggt
tcagagcactctgcatcaccatcacaagggagtagtcaacagcagtttttggaagtggaa
gcaaatgtagatgattcaatggatattcaacaacaggacatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaccaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatcacgg
tctggttctcgtaagcggaaacacagaaagcgttcgcgctcgagatcaagagaaaggaag
agaaagtcatctcggtcatactccagtgaaagaagggctagggaaagggaaaaagaacgt
cagaaaaagggattgcctcctatacggtccaaaacactaagtgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacacaacaagatttaacaaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagaggatgtgcttatgtctgtatg
gtgcataggcaagatgcatatcgtgctcttcagaaacttagttctgggtcatataaaatt
ggatctaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggagtttcctatattccatgggagaaagtgaaactggat
gatttggagggctttgctgaaggtggcatgattgaccaggaaacagttaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctaca
gttgataagagtaccgttattacaacacagacagaagcttacacacagccagtcactatg
ctgcagattccagtagctcctgctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggttatagcccaattcctcctccacccttcttgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcctccagttccacctgtt
gtcccaccacctgttgtcccaccacctgttgtcccaccagttgttccaacacctttagta
cagcctccattaccaattgcacaggacacaatgaaggatgttccttttactggccttgtt
ctaccagttggcacagttactagcaatctagctactccaacattatctgctggaagtgtt
tttaatcccctgccaatgagcaaatcagaatcagatgacaaaggatcacatcttacagac
cttcagatttcttccagtgaaaacaacagatctgtgcaaagtgatgtctcgagtagctct
ggacttgttggaggagtgcagccacccagtgtctcaagcagttctgggcttactggagaa
gggccctcacccactgtctcaagtagctctggacttgcagggggagtacagccacccagt
gtttcaagcagctctggacttgtaggaggagtgcaaccaccaactgtttccagcaattct
ggtcttgcaggaggaatgcagctacctgctgtctccagtagctcttctcttgctggcggg
attcagccaactaatgcctcaagtagctctggacttatggctggagtgccaccaccaaat
gtctcaagtagctcagggcttctagctggagttcatccacccagtgtctcaagtagccct
ggccttctgacaggaatgcagccacctagtgtgtccagcagctcaggagttctggcaggt
gtacagccaccgagtgtttcaagcaattctgggcttctcttaatgccaccacccaatgtt
tcaactagttctggacttatgggagtgccaccaccaaatatttcaagtaattctggactt
ctggcaatgcagcatccagctgcagttccaaatatgcctcatttaaatatcagtaatcaa
agaatgccaggaatgcctcttatagatatccgcccaggcctaatgccccattcacctgga
ccaaggtttccattaatgcagccaggaatgccaccacagcgtactcttcctcctcctgca
atccttgatccatctcttcacccaccaccacctcgaggtccttttcctccaggagatatt
tttaatcaaacagaaagaccttttggaacaccaggaagacaaaatattgatagcatttct
aatgcagagaaaaggctaccacttggaggtgataacattcaacaggagggagacagagat
tatcgctttcctccagtggaaaaccgagataatcttaacagaccatctccagtggacgtc
agagattctgttggacgaccaccagttgatccaagagagggtttaggaaggccaccagta
gatggaagagaacattttgcaagaccacatatagacatgagagaaaattttggaagacca
agtatagataaccttggccgaagagagcattttggtttcaattcagacaagcactgggga
cagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggtcctaaa
ggcttccatgaagacagagagaggtttcggcatgtaaactataggtttgatagtagaagt
ggtcccagttggaatagaggatttgaacaagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaatt
aatggaaacaggtttggaagagacagaatgccaaacaactggatcccgcctccacatcca
cgggtttttgaatattttgatggggccacttctcaacgcaaagctgataatatgccccag
gtaaatggtgaaaatacagagacagaaagtcagccgccaactgcacagatgcaggatgat
ccagaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgacaca
gaagctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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