Cinclus cinclus (white-throated dipper): 134042726
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Entry
134042726 CDS
T10813
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134042726 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134042726 (MSH6)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134042726 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
134042726
NCBI-ProteinID:
XP_062346493
LinkDB
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Position
3:97555475..97569716
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AA seq
1346 aa
AA seq
DB search
MSRQSTLLRFFSKATPPPPQAGTEPPAEPRRASGERNGLQAAGSPPGGAGRAAARRGEKG
AGGGAAAKAPSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFF
DDSPTRGWISVKYLKPYKGSSDGETMKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELA
VCNEPSDTEEEEEEEMEEMSENASGNSEDCNSEEDVKSNKRVMSRERAVKAKRRRVLDSD
SDHSGSDVEFKPDGKEAASSEEASSGVDENESSDTETESVAESPIKVPSKRKRGEVKKPA
KRSSLGNECSETPKRAATVSSEAKSKLTSFAAPESFESQANACSGSSGGFSVWEHEKLDW
LQEGKRRDSHRRRQGDPNYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKF
YELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMM
EARCKSAGHSTRFDKVVRREICRIITKGTQTYSVMDCDPSENHSKFLLCVKEKDDSAGTR
VYGVCFVDTSMGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLV
SCIQEGLASGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPG
ENSELALSALGGCVFYLKKCLIDQELLSQANFEEYIPVDIATAKNMSSSSLFARTGQRMV
LDGVTLMNLEVLQNGTNGTIEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDA
VEDLLAVPDKMSEVSECLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKK
IADFLSALEGFKVMNEIVSVMEEVASDFKSRVLKQLVTRKAKNPDGCFPDLSAELTRWDT
AFDHNQARKTGVITPKAGFDPDYDGALQDIKAVEEDLRKYLEKQRKLLGFKSVQYWGTGK
NRYQMEIPESAVSRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMR
RLFYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPVILLPMDNAPPFLELRN
SRHPCITKTFFGDDFIPNDIVIGSKDESSSSEASCVLVTGPNMGGKSTLMRQAGLLVVMA
QLGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATQHSLVLVDE
LGRGTATFDGTAIASAVVKELAERIRCRTLFSTHYHSLVEDYSHSGAVRLGHMACMVENE
SEDPSQETITFLYKFIEGACPKSYGFNAARLANIPEEVIQQGHRKAKEFEKTTLSLRTFR
YLCQVLDGATSDAKTVRKLMEMIDRL
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccagagcactctgcttcgcttcttctcgaaggccaccccgccgccgccgcag
gccggcaccgagccccccgccgagccccgccgtgcctcgggggagcggaatggcctgcag
gccgccggcagcccccccggcggggcgggccgagctgcggcgcggcgcggggagaagggc
gcggggggcggcgcggccgccaaggcccccagtgtctcctgtgagtattctcctggggac
ttggtgtgggccaagatggaaggttatccctggtggccgtgtctcatatacaatcacccc
actgaaagaacaatagtcagaggaaaaggaaaatccactcgtgtccacgtgcagttcttc
gatgacagccctacaaggggttggatcagtgttaaatacctgaagccatataaaggttca
tcagatggggagacaatgaagggaggtatgttttacagcacaaagcctgaaattaaaaga
gccatggtgctggcagatgatgccatgagcaaagataaaaccaagaggcttgaactggca
gtatgcaatgaaccttcagacacagaggaggaggaggaggaggaaatggaggagatgagt
gaaaatgcatcaggcaacagtgaagactgcaatagtgaggaggatgtgaaaagcaataag
cgagtgatgagcagggaaagagctgtaaaagccaagagaaggagagtgttggattctgac
agtgaccatagtggctctgatgtggagttcaagcctgatgggaaagaagcagcaagcagt
gaggaagccagtagtggggtagatgaaaatgagtcttctgacacagagacagagagtgtt
gcagagagccccataaaagtcccttctaaacgaaagagaggagaggtgaaaaagcctgct
aaaaggagtagcttgggaaatgaatgttctgaaactcccaaaagagcagcaacagtctct
tcagaagccaagtctaagctgacatcgtttgcagcacctgaaagttttgaatctcaagca
aatgcttgcagtggaagtagtggtggcttctcagtgtgggaacacgaaaagcttgactgg
ctgcaagaagggaagaggagagattctcacaggaggcgtcagggtgaccccaattacgac
ccctgtactctgtatgtgcctgaggattacctcaacaagtgcacgcctggcgtgcgaagg
tggtggcagctcaaaagccaaaactttgatgctgtgatttgctacaaggtaggaaagttc
tatgagttgtatcacatggacgcagtcactggtgtgaatgagttgggcctgatctttatg
aagggcacctgggcccactcaggttttccagaaactgcgtttggccgattctccgatgtg
ctggtacagaagggctacaaggtggcgcgcgtggagcagacggaaacacctgaaatgatg
gaagcgcgctgcaagtcggcaggccactccaccaggtttgacaaggtggtgcgccgggag
atctgcaggatcatcaccaagggaacccagacctacagtgtcatggactgcgacccctcc
gagaaccacagcaagttcctgctgtgcgtgaaggagaaggacgactcggccgggacgcgc
gtgtacggggtctgcttcgtcgacacctccatggggaagttccacgttggccagttccca
gatgaccgccactgctccaggtttaggactttggtagctcattacacccctgtgcaggtg
ctatttgagaaggggaatctgtctgtggacacacagaagatactgaagggctcacttgtt
tcttgcattcaggaagggctggcctcgggctcccagttttggaacgcatctaaaacacta
aaagtccttcttgaggaagggtatttcaaggagaagcagaattctgaaaatggatgttct
ctgccctctgtaatcaaatctctgacttcagagagtgactccctgggattaactcctggt
gaaaacagtgaattagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgt
ctgattgatcaggagctgttatcacaggcaaactttgaggaatacatccctgtggatatt
gctactgcaaaaaacatgagttccagtagtttgtttgccagaactgggcagcggatggtg
ctggatggagtcaccctgatgaacttggaagtcctgcagaatggaaccaatggaaccata
gaaggtactttgttggaaaggattgattcttgttgtacaccatttgggaagcgactcctg
aaacagtggctctgcgctccgctttgtaatcctaaatccatcaatgatcgtttggatgct
gtcgaggacctcctggcagtgccagataaaatgtctgaagtcagtgagtgcctcaagaaa
ctgcctgaccttgaaaggctgctcagcaaaattcacagcatcgggtcaccgctcaaaagt
cagaaccatcctgacagcagggccatcttctatgaagaactcaaatacagcaaaaaaaaa
atcgctgactttctgtctgccctggagggattcaaagtaatgaatgagattgtcagtgtc
atggaagaggttgccagtgacttcaaatccagagtcctgaagcagctggtcacccgcaaa
gccaaaaatcctgacggctgcttcccagacctgagtgcagagctcacaaggtgggacacc
gcctttgatcacaaccaggctcggaagacaggagtgattaccccaaaggcaggttttgac
cccgattatgatggagcactacaggatatcaaagctgtcgaggaagatcttcggaagtac
ctggaaaagcaacgcaagctgcttgggttcaaatccgtgcagtactgggggacaggcaag
aaccggtaccagatggaaatcccagaaagtgccgtgtctcgtaacctgcctgaggaatat
gagctgaggtcgagcaggaagggctacaagcgctactggaccaaggagatcgagaagatg
ctggctgcgatggtgaacgccgaggagcgccgcgatgccgccctcaaagactgcatgagg
cgcctcttctacaactttgacaagaacagcaaggactggcagacagctgtggagtgcatt
gctgtgctggatgtcttgatgtcccttgctcactacagtcaaggtggtgatggacccctg
tgcagacctgtaatcctgctgcctatggataatgctcctcccttcctggaacttagaaat
tcccgccatccatgcatcacaaaaactttctttggggatgattttattcccaatgacatc
gtaattggcagcaaggatgagagcagcagcagtgaggcctcctgtgtgttggtaactggc
ccgaacatgggtggcaaatctacgctcatgagacaggctggtctcctggtggtcatggcc
cagctggggtgctacgtgcccgcggaagcctgcaggctcacacccattgaccgcgtgttc
acacggctcggcgcctccgacaggatcatggctggtgaaagtaccttctttgttgaatta
agcgagacttccagcattctgcagcatgcaacacagcattcccttgttctcgtggatgaa
ctgggcagaggcacagccacgtttgatggaacagccatagcgagcgcggtggtgaaggag
ctggcggagaggatccgctgccggacgctgttctccactcactaccactccctggtggag
gactattcccacagtggggccgtgcgcctgggccacatggcatgcatggttgaaaatgag
agcgaagatccaagccaggaaacaattacattcctgtacaagttcattgaaggagcctgc
ccaaagagctacggcttcaatgcggcaagacttgcaaatattccagaggaagtcattcag
cagggacacagaaaagccaaagagtttgaaaaaacaaccctgtcactgagaacatttagg
tacctgtgtcaggtgctggatggagcaaccagtgatgcaaagacagttcggaagctcatg
gagatgattgaccggctttag
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