Cinclus cinclus (white-throated dipper): 134042935
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Entry
134042935 CDS
T10813
Symbol
SMC1B
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04110
Cell cycle
ccic04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
134042935 (SMC1B)
04114 Oocyte meiosis
134042935 (SMC1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccic03036
]
134042935 (SMC1B)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
134042935 (SMC1B)
Meiosis-specific proteins
Cohesin complex and associated proteins
134042935 (SMC1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_29
Motif
Other DBs
NCBI-GeneID:
134042935
NCBI-ProteinID:
XP_062346866
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All DBs
Position
4:complement(20532581..20561146)
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AA seq
1238 aa
AA seq
DB search
MGYLKLLVIKDFKSWKGQQVIGPFMRFNCVIGPNGSGKSNIMDAVSFVMCEKTSNLRVKS
VRELIHGAHVGKPVSSTASVKIVYCEEDGEEKTFSRVIRGSCSEFLFNDKSVSRSAYISE
LEKVGILVKARNCVVFQGTVESIAMKKPKERTQLFEQISNSWEYAEDYEQKKKKMQQADE
DAQFNYNKKKSVAAERKQAKIEKEEAEHYQMLIKELAEERIQLQLFQLYHNEKQIDFLKN
NLDEKNMEVHIKKESLSTAEDSFRVKKKMFGILNREQQQMEKEMKTLEASLIQQRPLYIK
AKENTSYQIKKVEVSKKSLRDKEKLCDKEKQNIKELEIELNDIEKAWRVFEEKTEEERRQ
RAADIELGESQLERYKELKEMARKKVATLAQQLEKLRWEDKGDQERLKLNRRKKNEIEET
IKQTVVQVEELEKRIEKLEEYTKICMGSLAEKKQQEEVLAKEIENATIKMAEVNEDLNKI
VDELQNAKIDYHEGRREQMRAEILESLKRLYPDSVFGRLLDLCHPIHKKYQLAVTKVFSK
YMTAIVVATEKIARDCIRFLKQERAEPETFLALDYLDVKPINEKLREIRGAKMMVDVVQT
HFAPLKKVIQFVSGNALICETVKEAKHIAFDGPVRLKTVALDGTLFLKSGVISGGSSDLR
FKARCWDEKEITKMKERRDSLINELKDLMKIRRKEADLKQLRAQCQGTQTRLKYSQSELD
LIKKKHLANLFMEKSKLESELVNIEAQHGMLNEGIVQRKEKIEAFQKKINEVEDTVFQEF
CEEIGIENIRVYEQEHVRQQEEIDKRRLEFENQRTRLNIQLEYNRDHLQKFTNSLSKLRE
TVHKDEGEIIKLQRDEERLLKKVNELLEEQQHLKDRLSAHKSELTKSQNEVEEFRKTMLT
LNREVTKLQREAAALETSLEEKRLRRHNLLLECKVQDLKIQLLFGSLDDISEVELGTEIE
DTQTLSGIYEREEGIQIDYSTLEVNLKELESDQDIDDHVNQMQQEIKSKEATLMKTAAPN
LRAGEKLQIARDKFQESVDAFETSRKEARVCKREFEEVKKRRYELFTRCFEHASIAIDKI
YKRLCRNSSAQAFLSPENPEEPYLEGIGFHCVAPGKRFMPMDSLSGGEKTVAALALVFAI
HSFRPAPFLILDEIDAALDNTNIDKVSSFIREQAHEQLQMIVISLKEEFYCKADALMGVC
PEYDDIMFSQVLTLDLTEYPEEEEQDTAEKPSRGSLFE
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgggttacctgaagctcctggtgataaaagactttaagtcgtggaaggggcagcaggtt
atcggtcccttcatgaggttcaactgcgtcatcgggcccaatggatcaggaaaatctaac
ataatggacgctgttagctttgtgatgtgtgaaaagacatcaaatttgcgagttaaaagt
gttagagaacttattcatggagcacatgttggaaaacctgtgtcttctactgctagtgtg
aagatagtatattgtgaggaagacggggaagagaaaacattttcaagagttatccgtggt
agttgttctgagtttcttttcaatgacaagtctgtcagcagatctgcatacatatctgaa
cttgaaaaagtaggcattcttgttaaggccaggaattgtgttgtttttcagggaacagta
gagtcaattgcaatgaagaagccaaaggagaggactcaactttttgaacaaattagtaat
tcatgggaatatgctgaagactacgaacaaaagaagaagaaaatgcagcaagcagatgag
gatgctcagtttaattataacaagaagaaaagtgtggcagcagaacgcaaacaagcaaag
atagaaaaagaggaggcagagcattaccagatgctaatcaaggaactggctgaagaaagg
atacagctgcagctttttcagctttatcacaatgaaaaacaaattgactttctgaaaaac
aatttggatgaaaagaatatggaggttcatatcaagaaagagtctctttccacagcagaa
gattctttcagagtcaagaagaaaatgtttgggatactaaacagggaacaacagcaaatg
gaaaaagaaatgaagactctggaagcatcactgattcagcagagacccctttatataaaa
gcaaaggaaaacacgtcctaccaaataaagaaagtagaagtgtctaaaaagtctctaagg
gacaaggaaaaattgtgtgataaggaaaagcagaacataaaagaactagagatagaattg
aatgacattgagaaggcatggagagtgtttgaggagaaaactgaagaagagagaaggcag
agagcagcagatattgagctgggagaaagtcagttagagcggtacaaagagctaaaggag
atggcgagaaagaaagtagctacgctagcccagcagctggaaaaacttcgttgggaggat
aaaggagatcaagaaaggctgaaacttaatcgcaggaagaaaaatgaaattgaggaaacc
ataaaacagactgtggtacaggtagaagagcttgaaaaacgcatagagaagttggaagaa
tacactaaaatatgcatgggatcattagcagaaaaaaaacagcaggaggaagtgctggct
aaggaaattgagaatgcaacaataaaaatggctgaagtgaatgaagacttgaacaaaata
gttgatgaactgcagaatgccaaaatcgattaccatgaaggaaggcgtgagcagatgaga
gcagagatcctggaaagtctaaaaaggctgtatccagattctgtgtttggaagattgctt
gacttgtgtcatcctattcataaaaaataccagcttgctgttaccaaggtattcagcaaa
tacatgactgctattgttgttgccactgagaaaatagcaagagattgcattcggtttcta
aaacaagaacgagccgaacctgaaactttccttgctttggattaccttgatgttaaacca
attaacgagaagctaagggagataagaggagctaaaatgatggtggatgttgtacaaacg
cactttgctccattgaaaaaagtgattcagtttgtgagtgggaatgccttgatctgtgaa
acagttaaggaagcaaaacacattgcatttgatggaccagtgaggttgaaaacagtggct
cttgatggaactttatttttgaaatctggagtgatttctggaggatcaagtgatttaaga
tttaaggctagatgttgggatgagaaagaaattaccaaaatgaaagaaagaagagatagc
ttgattaatgagttaaaggacttaatgaagatcagacggaaggaggctgacttgaagcaa
ttgcgtgctcagtgccaaggaactcagacacgacttaaatattcacagagtgaattagat
cttattaaaaagaaacatcttgctaatctcttcatggaaaaatcaaaactggaaagtgaa
ctggtaaatattgaggctcagcatggtatgctgaacgaaggaatagtacaaagaaaagaa
aaaatagaagcatttcagaaaaaaattaacgaggttgaagatactgttttccaagaattc
tgtgaagaaattggtatagaaaatattcgtgtgtatgaacaagaacatgtgagacaacaa
gaagagattgataagagaagactggagtttgaaaatcagaggacacgactgaacattcag
ctggagtataatcgtgatcatctacaaaagtttacaaactcactcagcaagttgagggag
acagttcataaagatgaaggtgaaattatcaagctgcagagggatgaggaaaggcttcta
aaaaaagtgaatgaacttttggaggagcagcaacaccttaaggatagattaagtgctcat
aagtctgagcttacaaaaagccaaaatgaagttgaagagttcagaaagacgatgttaact
cttaatagagaagtcacaaagttgcagagggaagctgcagctctagaaacctctctggaa
gagaagagattaaggagacataatctgctgcttgaatgcaaggtgcaggacctgaaaatc
cagttactgtttggatcactggatgacatcagtgaagtagagctaggaactgaaatagaa
gacacccagactctatcaggaatctatgaaagggaagagggaattcagatagactacagc
accctagaagtcaatctaaaggaactagaatctgatcaagatatagacgatcatgtgaac
caaatgcagcaggaaatcaaatctaaagaggccacattaatgaagacagcggctccaaac
ctgagagcaggagagaagttacagatagctcgggacaagtttcaagaatcagtagatgct
tttgagaccagcagaaaggaggccagagtatgcaagcgggaatttgaagaggtgaaaaag
aggagatatgagctgtttacccggtgctttgagcatgcctccatagccattgacaagatc
tacaagaggctttgcaggaacagtagtgctcaggcattccttagtcctgaaaatcctgag
gagccctatctggaaggcattggctttcactgtgtggctccaggcaagcgctttatgcca
atggacagtttgtcaggaggggaaaaaacagtggcagccctggctcttgtgtttgccata
cacagctttcgtccagctccttttctcattttggatgagatagatgcagcactggacaac
acaaacattgataaagtctcgagtttcattagagaacaggcacatgaacagttacaaatg
atagttatttccctgaaggaagagttttattgcaaggcagatgcattgatgggagtgtgt
cctgagtacgatgatattatgttcagccaagtcctgaccctggatcttactgagtaccca
gaggaggaggagcaggacacagcagagaagcccagccgtggttctctcttcgaatag
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