Cinclus cinclus (white-throated dipper): 134043169
Help
Entry
134043169 CDS
T10813
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccic03016
]
134043169 (RTCB)
Enzymes [BR:
ccic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
134043169 (RTCB)
Transfer RNA biogenesis [BR:
ccic03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
134043169 (RTCB)
Prokaryotic type
tRNA splicing ligases
134043169 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
134043169
NCBI-ProteinID:
XP_062347269
LinkDB
All DBs
Position
4:complement(55563428..55573989)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgtttgaggagctgcgcaatgcctgccgcggaggaggtgcgggt
ggcttcttgcctgctatgaaacagattgggaatgtggctgcattgcctggcattgttcat
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggcgtcggctttgacatc
aactgtggtgtccgcttgctgcggacaaatttggatgaaagtgatgtgcagcctgtgaaa
gagcagctcgcccaggctatgtttgaccacattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggccctggagatgggtgtggactggtctctc
cgggagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgcta
caggctgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctggga
accctaggagctggaaatcattacgctgagatccaggtggtggatgagatttacaacgaa
tatgctgctaagaaaatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagagggctgggccaccaggttgccacagatgcactggtggctatggaaaaagcc
atgaaacgggacaaaatcatagtgaatgatcgccagctggcctgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgacatgcacgttatctatgatgtgtctcacaacattgccaaagtggaacag
catgtagtggatggaaaggagaggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctctcattgctgttgattatcaactgactggacagcctgttttg
attggtggcacaatgggcacctgtagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacgtgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggttatggaagaagcaccagagtcttacaagaatgtgactgat
gtggttaacacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
DBGET
integrated database retrieval system
