Cinclus cinclus (white-throated dipper): 134043430
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Entry
134043430 CDS
T10813
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03013
Nucleocytoplasmic transport
ccic03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134043430 (UPF2)
mRNA cycle factors
P-body specific factors
134043430 (UPF2)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134043430
NCBI-ProteinID:
XP_062347679
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Position
4:16006687..16059235
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AA seq
1271 aa
AA seq
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MPAERKKSANMEEKESQLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKM
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKYSQSKDSSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKD
SIAEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagcaaatatggaagaaaaagaatctcagttaaataac
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtgaaggttggcatgaagagagagactttaaaggttcctgaagataaaaagaaaaaaatg
gaagaggataaaagaaagaaggaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaggaacaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaaacaagaggaggaagagaaaaagaaacaagaagaagaagctgctcaactg
aaggagaaagaggaagcacatcagctccatcaggaggcttgggaacgccatcaggcaaga
aaagagctccgcagcaaaaaccagaatgcaccggagagtcgtccggaggaaaacttcttc
agtagactggactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaggccaaactgaaaatatcagacgtgaactgt
gctgtgcacttgtgttccctctttcaccagcgatatgctgattttgctccttcattactt
caggcttggaagaaacattttgaagcaaggaaagaagagaagactcccaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggatttttactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattattaacgctgatcgggaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcctttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
agacgcattctccactccaaaggagagctgagtgaagatcgacacaagcaatatgaggaa
tttgcaatgtcgtatcagaagctgctggcaaattctcagtctctggctgatcttttggat
gagaacatgcctgacctcccccaggagaaaccaacgcctgaggaacatggacctggtatt
gatattttcacaccaggaaaacctggagaatatgacttggagggcggtatctgggaagat
gaagatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatattctcagagcaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggag
ctggagaacctggatattaatgatgatgcgctggagctggactgcggagatgaggcagaa
gatcttacgaagaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaactcatagtagatgcttttcttcagcagcttccaaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagccaacaga
agaaaactggtacgagcacttttcatagttcctagacaaagattggatttgctaccattt
tatgcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctctgt
tccatgctgaaaggggatttcagattccatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaag
aatgatactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcatgtaccttgctggaaacctgtggaagattcctcttcagatcaccagaatctcac
ttgagaaccagcgttcttttggaacagatgatgaggaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatatccgtaagcttctttacaag
gatctctccaaagtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtt
ggaattcatgttgtggatggagtgctagaggatattcgactaggaatggaggttaatcaa
ccaaagttcaaccaacgacgaatcagcagtgccaagtttttgggggagctttacaattac
cgaatggtggagtcagctgtaatatttagaactctgtattccttcacctcatttggtgtg
aaccctgatggcagtcctagtccactggaccctccagaacacctttttagaatcagactt
gtctgtactatcctcgatacctgtgggcagtattttgacaggggatccagcaagcgaaaa
cttgattgcttccttgtgtattttcagcgctatgtgtggtggaaaaaaagtctggatgtt
tggacaaaagaccacccttttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaa
gacttggaacgagaattcttgataaaattgggaattgtgaatgacaaagattccaaggat
tccattgcggaaggagagaatctggaagaagatgaagaagaggaggaaggtggagcagag
acagaggaacagtctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctct
gacaatgaggaagaagagggtgaagaagaggaggaagaaaacactgattatcttacagac
tccaataaggaaaatgaaactgatgaggagaatacagaagtaatgattaaaggaggagga
ctgaagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataaaatgatg
ctggaaaatctccagcaacggagtggtgaatctgttaaagtgcatcagctggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggccccccacttggaggtggggaagga
gagtcagagtctggggacacaatgccatttgtcatgttaacaagaaaaggcaacaaacag
cagtttaagatcctaaatgtgccgatgtcttcccaacttgctgcaaaccattggaaccaa
cagcaagcagaacaggaggagaggatgaggatgaaaaagctcactttggatatcaatgaa
cggcaggaacaagaggactatcaggaaatgttgcagtctctggcacaacgtccagctcca
gcaaatactaatcgtgagcgacggcctcgttaccagcatccgaagggggcacctaatgca
gatctaatctttaaaactggtgggaggagacgctga
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