Cinclus cinclus (white-throated dipper): 134043466
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Entry
134043466 CDS
T10813
Symbol
YBX3
Name
(RefSeq) Y-box-binding protein 3
KO
K06099
cold shock domain protein A
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
134043466 (YBX3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134043466 (YBX3)
03041 Spliceosome [BR:
ccic03041
]
134043466 (YBX3)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, DbpA-like
134043466 (YBX3)
Spliceosome [BR:
ccic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
134043466 (YBX3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
S1CSD-TOTE-2
Rho_RNA_bind
Bim_N
Motif
Other DBs
NCBI-GeneID:
134043466
NCBI-ProteinID:
XP_062347802
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All DBs
Position
4:25131484..25148922
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AA seq
277 aa
AA seq
DB search
MSEAPETSATSPAPAAPPVPAAAAAPPAAPDAAPKSAAAPGAAVAEAAPAAATTAAAESA
KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF
DVVEGEKGAEAANVTGPNGVPVEGSRYAADRRRYRRGYFGRRRGPPRSGGEGDMKDGVTE
GGQLQQVHRNPTYRPRYRRGPPRPRPAPVTGEAENKENHHEASAMGQQPLRRGYRRPYNY
RRRPRPASAPAQEGKETKATETPAENPAPVTEQSGAE
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggcgccggagaccagcgccaccagccccgcgcccgctgcgccgcccgtcccg
gccgcggctgccgcgccgcccgccgccccggacgccgctcccaagagcgccgccgcgccg
ggtgcggctgttgctgaggcggcccccgccgctgccacaaccgcggcggccgagtcggcg
aagaaagtgctggccaccaaagttcttggcacagtgaagtggttcaatgtcagaaatgga
tatggctttatcaacaggaatgataccaaagaagatgtgtttgttcatcagacggcaata
aagaaaaacaatccacggaagtacctgcgcagcgttggtgatggagagactgtagaattt
gatgtggtcgagggagagaagggtgcagaagcagctaatgtcacaggtccaaatggagtc
cccgtggaaggcagccgctacgctgcagaccggcgccgctatcgacggggctactttggc
cgacgccggggcccacctcggagtggtggtgagggagacatgaaggatggggtcacagaa
ggaggacaacttcagcaagtgcacaggaatcctacctaccgtccccgctaccgcagaggg
ccccctcgcccacgccctgccccggtgactggagaggctgaaaacaaggagaaccatcac
gaggccagtgccatgggccagcagccgctgcgccgtggctaccggcgcccctacaactac
cggcgccggccgcgcccagccagcgctccggcacaggaaggcaaagagacaaaggcaact
gaaacacctgctgaaaatcctgctccagtgacagagcagagtggtgctgagtaa
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