Cinclus cinclus (white-throated dipper): 134043902
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Entry
134043902 CDS
T10813
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134043902 (HTT)
04131 Membrane trafficking [BR:
ccic04131
]
134043902 (HTT)
03029 Mitochondrial biogenesis [BR:
ccic03029
]
134043902 (HTT)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134043902 (HTT)
Membrane trafficking [BR:
ccic04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
134043902 (HTT)
Mitochondrial biogenesis [BR:
ccic03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
134043902 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
134043902
NCBI-ProteinID:
XP_062348635
LinkDB
All DBs
Position
5
Genome browser
AA seq
3093 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPASLPEEPLQRPKKELSATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASR
SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEEGLDDDSETRSDVSTASFTASVKGEI
ASELASSSGVSTAGSVGSSAADPTGHDIITEQPRSQHTLQSDSVDLASCDLTSTATEGDD
DEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANVLQDDSSESFGNSSLALQQSHLLKTMSHSRQPSDSSVDR
FASKEDAADTGDHENKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLINVRSSTGNIFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVNFLEG
KTESLHRGIHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFSVSTITRTYRGYNMLQSPTDVTMENNLSRV
IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIG
MAGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEP
WPALADRALVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KEREPVEQASVPMSPKKSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYDGLSANPNKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSAQLKTSISSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQVINRLRCGENNTPEDR
TEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLIHI
FKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVNYT
NYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCDYV
CQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLAA
PTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQS
SIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDGED
QPALENVVLDKDWYVSLVRSQCYIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSLLA
PCLSLGMNEISREQKSSLFETARRVTLDHVSSAVQNLPANHQVFQPLLPAEPSAYWKKLS
DIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEDDILKFVVMSVEALSWHLVH
DQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGNQL
LSPERKNTSKPLSEGEIDSNVLKTKDIIAACEMIAEMVECLQTVLSLGHKRNSSIPAFLT
PVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIFKEF
IYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAITSL
VLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIA
THHLHQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNNIT
PLREEEWGEDEEDENDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSNPS
KRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATCKA
AAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIISEY
LLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSDES
TPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTG
KEKISPSRIPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDFFP
PQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPV
AMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEELDR
RAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9282 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaggccttcgagtctctgcgctccttccagcagcag
cagggcccggcttccctccccgaggagccgctccagagaccaaagaaagaactttcagct
accaagaaagatcgagtgaatcattgtctaacaatatgtgaaaacatagttgctcagtca
ctaaggaattccccagaatttcagaaactactgggcattgctatggaactctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttacagttggaactgtataaagagatt
aaaaagaatggtgcttcaagaagtctgcgtgctgcactctggagatttgctgagcttgcc
catctagttcggcctcaaaagtgcaggccgtatttggtgaaccttttgccctgtctaaca
cggataagtaagagacccgaagaatcggtacaggagacgctggctgcggcaatacccaaa
atcatggcagccttcggcaattttgcaaacgacaatgagattaaggttttgttgaaggct
ttcatagctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagca
gtaagcatctgtcaacattcacgaagaacccagtatttttatgcctggttattgaatgtg
cttttaggcttgttggttcccgtagaagatgatcgtcctactcttttaattctgggtgtt
ttgcttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt
atacaggtttatgaactgactctgcactatacccagcatcaggaccataatgttgtgact
ggagctttagaattgctccagcagctctttagaacacccccccctgaactgcttcatgcc
ctgactgcctgtgggggcattgctcaggtcagtgtatccaaagatgaacctgccagcagg
agccgcagtgggagcattgtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaagtacttcttggtgaagaagaaggcttggatgatgat
tctgaaacccgatctgatgtcagcactgcatcgtttacagcctctgtgaagggtgagata
gccagtgaactagcttcttcatcaggtgtgtcaacagcagggtcagtggggagctctgct
gctgatcccacaggacacgacatcatcacagagcagccccgttcccagcatacgctgcag
tcagactctgtggacctggcaagctgtgatctgacaagtacagctactgaaggggacgat
gatgaagtgctcagtcgaagctccagccaaatcagtgctgtccagtcagatgccactatg
gacttgaatgatggcacacaggcttcctcaccaattagtgatagctctcagactactaca
gaaggtccagactctgctgtaaccccttcagacagttctgaaattgttttggagggtgct
gaaggacagtattctggaatgcaaattgggcagctacaggatgaggaggatgaagctgca
aatgttctccaagatgattcctcagagtccttcggaaattcttctcttgctcttcagcag
tctcatctgctgaaaaccatgagccatagtaggcagccctctgatagcagtgtggatcga
ttcgcatcaaaagaagatgcagcagatactggtgatcatgagaacaagccctccagggta
aagggggacatcgggcactatactgacagagactgtgctcctttggtgcactgtgtcagg
ctgctgtcagcctccttcctgctcactggggacaaaggagctttagttcctgatagagat
gtgagggtcagcgtaaaagccttggcagtaagttgtgttggagcagctgttgcacttcac
cctgagtctttcttcagcaaactgtataaaacacctctggaagcaatgggagaagagtat
gaggagcagtatgtatcagacattctgaactatattgaccatggagatccccagattaga
ggagctactgccattctctgtggaacaattgtcaactccattctaattaaatctcgcttt
gatgtggaaaaatggctcataaatgtcagaagctcaacaggaaatatcttttccttgata
gactgcatacctcttttacagaaaacattgaaagatgagtcttctgttacatgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgaacta
ggtttgcaattgattgttgacctccttactctgaagaacagctcatattggcttgtgagg
acagaacttctggaaacacttgcagaggtagattttcggctagtcaacttcttggaagga
aaaactgagagcttgcacagaggaattcatcattatacgggtctattaaagcttcaggag
agagtacttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacat
gtggctgcagcttcattaatgagacttgttccaaagctgttttataactgtgatcaagga
caggctgacccagttgtggcagtagcacgagaccaaagcagtgtgtacctgaaactcctc
atgcatgaaacgcagcccccgtctcacttttcagtgagcactatcaccagaacatacaga
ggttacaatatgttgcaaagtccaacagatgtcactatggaaaacaacctttcaagggtt
attgcagcaatttcccatgcattgacaatatccactacaagagcacttacgtttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagcgtgggatgg
cactgtggcgtttcccagccaagttcttcagatgaagctcagaagggctgcactattggt
atggctggcttggtcctgtctctcctttcatcagcatggttcccactggacctctcagca
catcaagatgctttgattttgactggaaacttgcttgcagcaagtgctcctaagtgctta
aagaatccctggagtgctgaagaagatgcaaaccaaggtgctgcaaagcaggaggaaccc
tggccagctctggcagatcgagcccttgtcactttagtagaacaactcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtgatggatgatgttgctcctggtccagcagta
aaggcagcattaccttctctcacaaacccaccttctcttagtccaattcggagaaagggg
aaagagagagagcctgtggaacaggcatctgtgccaatgagccctaaaaagagtggtgaa
gcaagtccagcttctaggcaaactgatgctacaggacctgttccaacaagtaaatcatct
tcagtaggaagcttttatcatcttccatcttacctgaagttatatgatgtcttgaaagca
acccatgctaattataaggttactttggatctccagaacactaatgagaagtttggatgt
ttcttacggtctgccttagatgttctctctcaaatcttggaacttgctactcttcaggac
attgggaagtgtgtagaagaaattttgggatatctaaaatcctgtttcaacagagagcca
acaatggcaacagtgtgtgtacagcagttattgaaaacattgtttgggacaaatttggct
tctcagtacgatggcctgtctgcaaaccccaacaaagctcaaggcaaagctcagcgcttg
ggttcctccaatctgaggcctggtctctaccactattgcttcatggcaccgtacacacac
tttacacaggcccttgctgatgccagtctgaggaacatggttcaggctgagcaggagcac
gatgcttcaggatggtttgatgtgctgcagaaagtttctgcacagctgaaaactagcatt
tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcggtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtcttctg
gattcagatcaggtgttcattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaatatcttctttttcctggtgttgctgtct
tatgagcgatatcattccaaacaaataattggaattcccaagatcattcagctatgtgat
ggcatcatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccatt
gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagagctggaa
actcagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccatcaggtgcta
gaaatgtttatcttggtattgcaacaatgtcataaagaaaatgaagacaaatggaagaga
ttgtcccggcaaatagctgacatcattctcccaatgcttgcaaaacaacagatgcatata
gactctcatgatgctttgggagtattgaacactttgtttgaaattttggccccttcatcc
cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctgtggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacatcgttctatcccgtatacaagagctttccttctcaccatattta
atttcatgtcaagtaatcaacagactgagatgtggagaaaataacacaccagaggatcgc
actgaggtcaaacaggtgaaatacccacctgaggagacattttcaagattcttactacaa
ctggttggaattctactggaagatattgttaccaagcaattaaaagtggacatgaatgag
cagcaacatactttctactgccaggagctgggcacgctgctcatgtgcttaatacatatc
ttcaagtcagggatgtttagaagaatcacagctgcagccaccagactttttacaggagat
ggatctgatggtagtttctatacacttgaaagtctgagtgaccttgttcagtccatgatt
cccactcatccttctttagttctcctctggtgtcacatcttgcttcttgtcaattacacc
aactacaactggtggtcagaagtgcatcaaaccccaaagcgacacagcctttctactact
aaactgcttagccctcatatatctggagacagtgatgaatccgacttggaatctaagcgt
ggcatgtgcaatcgtgagatagtgagaagaggagcactcattctcttttgtgactacgtt
tgtcaaaacctacatgattcagaacacctgacctggcttattgtgaatcatgttcaagac
ttgattaatctgtcccatgagcctccagtacaagattttatcagtgctgttcacaggaat
tcagcagccagtggtctcttcatccaggccattcagtcacgttgtgagaatcttgcagct
cccacaaccctgaagaagactttgcagtgcttggagggaatccacctgagccagtccggg
gctgtgctgaccctgtacgtggacaagctgttgtgcactcccttccgagtgctggcacgc
atggtggacaccctggcctgccgccgtgtggaaatgctgctggcagcaactctgcagagt
agcattgctcagttaccggttgaagaactggatagaattcaggagtatcttcaaaacagt
ggattagcagcaagacaccaaagactttactcgctcttggacaggtttcgtcttatggta
gcaccagacacaaccagtccttcacctctggttacctcacacccactagatggagaagac
caaccagctttagagaatgtggttctagacaaagactggtacgtgtcactagtgcggtca
cagtgttatatcaagtctgactcagcactgctggaaggagcagagctggtaaataggatt
cctcagcctgacctgaattccttcatgaccagcaaggaattcaacctaagcttgttagca
ccttgtttaagccttggcatgaatgagatctcaagggagcagaagagcagtctctttgaa
acagctcggagggtaactctggatcatgtgtcttctgctgtacaaaaccttccagccaac
caccaggtttttcagccactattgccagctgagccctcagcctactggaaaaaactaagc
gatatctttggagatgaggtgatgtatcagtctatgatgacactttgtcgggcactggct
cagtatttgttgttactctcaaaactaccagctggcctccgtgttcctcctgacaaagag
gatgatatcctgaaattcgtagtgatgtcagtagaggcactatcatggcatttagtgcat
gaccagattccattaagtgtggatcttcaagcaggtctggattgttgctgtctgacacta
cagcagcccagtctctggaatttgctgtcttctgcagctcatgtgacatatgcttgctcc
ttaattaactgcattagatttatcatagaagcagttgctgtggaacctggtaatcaactt
ctgagtcctgaaagaaagaatacttcaaaacctttaagtgagggggaaattgattcaaat
gtactgaaaacaaaggacattattgcagcatgtgaaatgatagctgagatggtagaatgc
ctacagactgtcttgtcactggggcacaaaaggaacagcagcatccctgcatttctcact
cctgtcctcaagaacatcatcatcagtttagcaaggctgcctttagtgaatagctacacc
agagtacctcctttggtctggaaattaggctggtcaccaaagcctttaggtgacttcggc
acagtttttcctgaaatcccagtagaatttctgcaagaaaaggaaatctttaaggagttc
atctatcgcattaatacacttggatggatcagccgtactcagtttgaagagacttgggct
actttgcttggtgtgctcgtaactcagcccattgtaatggaccaagaggagaaccagcaa
gaggaagacacagagaggacccaaatcaatgttcttgcagtacaggccataacttccctg
gtgctgagtgcaatgaccatacctgttgcaggcaacccagcagttagctgtttggagcag
cagccccgcaacaaagctttaaaagctctggacacaaggtttgggaggaagctaagtgtt
atcaggggaattgttgaacaggaaattcaggcaatggtgtctaagagagataatattgct
actcatcacttacaccaagcttgggaccctgttccatcactttctcctgctactacaggt
gctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaaataggagat
atggattataaactgggacaggtctctatacactccatatggttaggaaataatatcact
cccttgagagaagaagagtggggtgaggatgaagaagatgagaacgatgtacccgctcct
tcctcaccaccaacctctcctatcaacaccaggaaacaccgggctggtgtagatattcat
tcttgttctcagttcttgcttgaactttacagtcagtggatattaccatccaaccccagc
aagagaaccccagtcattttgatcagtgaagtggtgcgatcacttttggcagtgtcagac
ttatttacagaaaggaatcagtttgagatgatgtacacaacactgacagagttgcgaaag
gtgcatccctcagaagatgagattcttgtacagtatttgataccagctacttgtaaggct
gctgctgttcttggaatggataaagctgtggctgaaccagtaagtcgactgctggaatca
accctaagaagcacccatatgccaagtcggattggagctctgcatggaattctctatatc
cttgagtgtgacttgctcgatgagacagcaaagcagctcattccaattatcagcgagtat
ctcctctccaatttgagaggagtagcacattgtgtgaatatccataaccaagaacacatt
ttggtaatgtgtgcagctgctttctatttgatcgagaattacccacttgatgtagggcct
gaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagtgatgaatca
acaccatctattatttatcactgtgtcctgagaggattggaacgactcctcctttcagag
cagctttccaggctggacagtgagtcactggttaaactgagtgttgacagggtgaatgtg
cagagtccccacagagcaatggcagccctgggattaatgctgacttgcatgtatacagga
aaggaaaagatcagccccagccgtatcccagatgcaaatcctggtgctcctgacagtgaa
tctgtgattgttgctatggaacgagtatctgtcctttttgatagaattaggaagggattt
ccttttgaagctcgagtagtggctcggattcttccacagttccttgatgatttcttcccc
ccacaagatgtaatgaacaaagtcattggagaatttctgtccaatcagcagccataccca
cagttcatggcaacagtagtttataaggtgttccagacactgcatagcactggacaatcc
tcgatggtccgtgactgggtgatgctctctctctctaatttcacacaaagaacacctgtg
gcaatggcaatgtggagtctttcctgtttctttgtcagtgcttccaccagtcaatggatt
tcagcaattcttccacatattattagcagaatgggaaaatcagagcaagtggatgttaac
atcttctgtttggtggccatagacttctaccgacaccagatcgatgaagaattggatcgc
cgagccttccagtcagtgtttgaggtggtagcatctccaggaaccccgtaccatcgccta
ctgacttgtttgcaaaatgtccataaggtcacagcatgttga
DBGET
integrated database retrieval system
