Cinclus cinclus (white-throated dipper): 134044049
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Entry
134044049 CDS
T10813
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03020
RNA polymerase
ccic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134044049 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
134044049 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134044049 (POLR2B)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134044049 (POLR2B)
Enzymes [BR:
ccic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134044049 (POLR2B)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
134044049 (POLR2B)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
134044049 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
134044049
NCBI-ProteinID:
XP_062349000
LinkDB
All DBs
Position
5:complement(56673983..56690448)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcaatatgatgaagacgatgatgaaatcacccctgac
ctgtggcaagaggcctgctggattgttattagctcctattttgatgaaaagggtttagtc
cgacaacagttggattcctttgatgaatttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaatcgatttacaagctgaagcccagcatgcctcaggagaagtggaagag
ccaccccggtatctgttgaagtttgaacaaatctatctctccaaacctacgcattgggaa
agagatggagcaccctcacccatgatgccaaatgaagccagactgagaaaccttacgtat
tctgcccctttgtatgtggatataactaaaacggttattaaagaaggggaggaccagttg
cagacccagcatcagaaaacctttataggaaaaattcctatcatgttgcgttccacatac
tgtttgctaaatggcttaactgaccgtgatctttgtgagctgaatgagtgcccacttgat
cctggtggctacttcatcattaatggatcagaaaaggttctgattgctcaggagaaaatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcttgtctggaaaattcctctcgaccaacaagtactatatgggtcagcatgctg
gccagaggtggacagggtgcaaagaagagtgccattggtcagcgcattgtagcaactctg
ccatatatcaaacaagaggtccccatcatcattgtcttccgtgcactcggctttgtgtcc
gacagggacattctagagcacatcatatatgattttgaagacccagaaatgatggaaatg
gtcaaaccttctctggatgaagcatttgtcattcaggagcaaaatgttgccctaaacttc
attggctcaagaggtgccaagccaggtgtcaccaaagaaaagagaatcaagtatgccaaa
gaagtcttgcagaaagaaatgctcccccatgttggtgtcagtgacttctgtgaaaccaaa
aaggcctattttctagggtatatggttcatagactgttgctggcagcactgggaagaaga
gagctggatgacagagatcattatggcaacaaaagactggatcttgctgggccactcttg
gctttcctgttcagaggaatgttcaagaatttgctgaaggaagtgagaatatatgcacag
aagttcattgacagagggaaagatttcaacttggagttggcaattaaaacaagaattatt
tcagatggtttgaaatattctttggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtatctcaggtgttgaaccggctgacgttcgcatccacactttcc
cacctgagacgcctgaattctccaattgggagagatggaaaactggccaagccccggcag
ctgcacaacactctgtggggaatggtttgccctgctgagacccctgagggtcatgcagta
ggacttgtgaagaacttagccctgatggcttacatttctgtggggtctcagccgtctcca
attttggaattcttggaagagtggagtatggaaaacctagaagaaatatctccagcagca
atagccgatgctaccaagatatttgttaatggctgctgggtaggaatacacaaagatcca
gagcagctgatgaataccctaaggaagcttcgtcgtcagatggacatcattgtgtcagag
gtctcaatgattagagatattcgtgagcgagaaatccgcatctacactgatgcaggcaga
atctgtcggccccttttaattgtggagaaacagaagttgctgctgaagaaaaggcacatt
gaccagctgaaggaacgagagtataacaattacagttggcaggatctcgtggccagtggt
gtagtagaatacattgacaccctggaagaagagactgtgatgctggcaatgactccagat
gacttgcaagagaaaggtgtggcatactgttcaacatacacacactgtgagattcaccca
tccatgatcctgggagtctgtgcatctattatccctttccctgatcacaaccagtctccc
aggaacacgtaccagtctgctatgggtaaacaggctatgggagtgtacatcaccaacttc
catgtccgtatggatacactggcacacgtgttgtattatccccagaagcccctggtaaca
acacgttccatggagtacttgaggttcagagagttaccagcaggtatcaactcgattgta
gcaattgcatcatacacaggctataaccaggaagactctgtcattatgaaccgttctgct
gttgacagaggctttttcaggtctgtgttctatcgctcatacaaagagcaggagtctaag
aaaggatatgaccaagaggaagtttttgaaaagcctacacgtgaaacttgccaaggtatg
agacacgcaatctatgacaaacttgatgatgatggtttgatagcccctggggtacgtgtg
tctggggatgatgtcatcatcggcaagacagtcacactgccagaaaatgaagatgagttg
gaaagcaccaacagacgcttcaccaagagagactgcagcaccttcctgcggaccagcgag
actgggattgtagatcaggtcatggtaaccctgaaccaggaaggatacaaattctgcaag
attagggtacgttctgtaagaattccacaaattggagataaatttgctagcagacatggc
cagaaaggaacctgtggtatccagtacagacaagaggatatgcccttcacatgcgaaggc
atcacacctgatataattatcaacccccatgccatcccttcccgcatgaccattggtcac
ttgattgagtgtcttcagggaaaggtgtctgcaaacaagggagaaattggtgatgctaca
ccttttaacgatgctgtcaacgtgcagaagatttccaaccttttatcagattatggctat
catctaagaggaaatgaggtcctctacaatggcttcactggtcgaaaaatcacatcccag
atcttcattggtcctacctattaccagcgcttgaagcacatggtggatgacaaaatccat
tctcgtgcacgaggaccaatccagatccttaacagacagcccatggaaggcagatctcgt
gatggtggccttcgctttggagaaatggaacgagattgccagattgctcatggagcagcc
cagttcttgagagaaagactgtttgaagcttcagacccataccaggtccatgtgtgtaac
ctctgtggaatcatggcaattgcaaacacgaggactcacacctacgaatgccgcggatgc
cgtaataaaactcagatatctttggttcgaatgccctatgcctgcaaactcctcttccaa
gaactgatgtctatgagtattgcacctcgtatgatgagtgtttag
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integrated database retrieval system
