Cinclus cinclus (white-throated dipper): 134044198
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Entry
134044198 CDS
T10813
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134044198 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134044198 (POLR1A)
Enzymes [BR:
ccic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134044198 (POLR1A)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
134044198 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
134044198
NCBI-ProteinID:
XP_062349298
LinkDB
All DBs
Position
5:5783191..5811711
Genome browser
AA seq
1656 aa
AA seq
DB search
MRPSKVVPWRRLVGVTFGMYTAEEIRKLSVKPITNPQYLDNVGNPAVNGLYDLALGPPDS
REVCATCTQNFSNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLEKGLLHAVHDLEIILNRFVEQCADATGSEIEEELNRHVQEMLQSSQRRDRCSN
VKNVCECRNKLVSQFWKAHMGSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYQKAGGECI
LDETAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMNPNESSGFSPDMFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDAQLIRKLLVFMAKEQCQPIKITEEI
QTTGGDSEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLITEKYPGIRQL
LEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEL
RQAVINGPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCRH
IKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQS
ELGRAEAYTLAITDKQYLVPKDGKPLPGLIQDHMISGVSMTMRGCFFTREEYMELVYRGL
TDKKGKIKICPPAIMKPQRLWTGKQVVSTLLINIIPDNYAPLNLTGKAKIGGRAWVKGPA
KGSLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLSCLGR
LFTAYLQLYRGFTMGIEDILVKREADHKRKKIIERSRQSGIEAVRAAFNLPETASCEEVQ
GKWQDAHLCKDQRDFNMVDMKFKEEVNNYSNEVNKVCMPLGLHRSFPENNLQLMVQSGAK
GSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIRPSE
FFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDG
LDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALARMESHQANQQFKVIKKWRARHQNSV
QREGGFLLFSQKKLASLKAQHPGGEMKNGRDPATLQLLKMWYELDEKKQRKYLKKTNKCP
DPSLGVWRPDTYFASVSETFENGVEGYINKWESESSRSYVHPALSSDRLKDLLYLKWQRS
LCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPM
MSVPVFSTKKALKKVKQLKKQLTRVCLAEVLQKVDIEESLHVKHKLNKHRLYKIKFHFLP
NEYYQEEKCVKPRQVLHFMETRFFKVLLEAIKRKTTKMASFNEVSTRKTTRKDLDDDQDK
TPNCLEAVAEEEENIVDAEADEGDGDATETKRRKNQEEEVDYESEEENGEENANENLEDE
DAESEKEGETPGAEEDQNRAEEVSLALPLTKVYFDLSSLLASLARSTVIHEVKGITRCLL
NESTNKEGEKEFVLQTEGINLAELFKYSDILDLNRLYCNDIHAMAKNYGIESALRVIIKE
IKDVFAVYGIVVDPRHLSLVADYMCFEGIYKPLNRIGIQSSSSPLQQMTFETSYKFLKEA
TMMGAHDELRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgtccaaagtggtgccatggcggcggctggttggggtgaccttcgggatgtac
acggccgaggagatcaggaaactgagtgtgaaacccataacaaaccctcagtacctggat
aacgtggggaatccggctgtaaatggtctgtacgacttggccttgggacctccggactcc
agagaagtgtgtgcgacttgcacgcagaacttcagcaactgccccggacactttggccat
atagaactgccattgcctgtctacaacccgctgttcttcgataaattataccttctaatc
cgaggttcttgtttgaattgccacatgctgacatgtcctcgagctgtggttcacttactg
ctaagtcagctgaaggtgctggagaaagggttgcttcatgctgtccatgaccttgaaatc
attctgaacaggtttgtggaacaatgtgcagatgcaacaggctcagaaattgaagaagag
ttaaatcgccacgttcaggaaatgttgcagagctctcaaagaagagatcggtgttcaaat
gtcaaaaatgtgtgtgagtgtagaaataaactggtatcacagttctggaaagcacacatg
ggttcaaagaaatgcccaaactgcaaatccaggagatcgctggtgcgaaaggaacacaac
agcaagctgacagtaacctatccttccacagtgtaccaaaaggcaggaggggaatgcatt
ctggatgaaacagcaggtattgatgaaagccagttagggaagagaggataccttacacca
atgactgccaaggaatacatcctggctctgtggaagaatgaaggtttctttctgcgttat
ctcttccctgggatgaatcccaatgagagttcaggattcagtccagacatgtttttttta
gatctacttgtggttccaccttcaaggtatcgtcctgtaaatcgcgtgggagatcgcctg
ttcacaaatgggcagactgtgaacttgcaggctgtgatgaaagatgcccagttgatacgg
aagctcttggttttcatggccaaagagcagtgccagccaataaaaattacagaagaaatt
caaacaacaggaggggatagtgaacctctggaccgttctgtgctgacaacgattccagga
cagagcattgcagataagctgtacaatgcttggatacgtctccagagccatgtcaacatt
gtgtttgatagtgacatggacaagctgataacagaaaaataccctggtattcgtcagctg
ttggagaagaaggaagggctgttccgcaagcacatgatggggaagcgtgtggattttgct
gctcgatccgtcatttgccccgacatgtacatcgggaccaacgagattggcatccctatg
gtatttgccaccaaactgacttaccctcagccagtcactccctggaatgtcaaagagctg
aggcaggctgtcatcaatgggcccaaggtgcaccctggggcctccatggtcattaacgag
gacgggtctcgcacggtgctgagcgccaccagcctgacccagcgcgaggccatcgccaag
cagctcctcaccccctcctcaggggcaccccagacggggctgaagattgtgtgtcggcac
attaagaacggggatgtgctgctgctgaaccggcagcccacgctccacagaccttccatc
caagctcaccgggcccggatcctgcctggggagaaggtgctgaggcttcactacgccaac
tgcaaggcttacaacgccgacttcgacggagatgagatgaacgcccacttcccacagagc
gagctgggcagagcagaagcctacaccttagccatcactgataaacagtacctggtgcca
aaggatgggaagccacttcctggcttaatccaggatcacatgatttctggagtcagcatg
accatgcggggctgctttttcaccagagaggagtacatggagcttgtgtaccgagggctg
acagacaaaaaaggaaaaattaaaatctgtcctccagccattatgaagccacaacgatta
tggacaggaaagcaggtcgtttccacgttgttaataaatatcattccagacaactatgct
ccactgaatttgactgggaaagcaaaaattggtgggagagcctgggtaaagggacctgca
aaaggatctctgaatcttgattcaatgtgtgaatctcaggttattatcagagatggggaa
ttactgtgtggagtcttggacaaagctcactttggcagctctgcctacgggctggtccac
tgctgctatgagatctatgggggtgaaaccagtgggaaagtgctgtcatgtctggggcgc
ctcttcactgcttacctgcagctgtacaggggatttaccatggggatcgaagatattttg
gttaaacgtgaagcagaccacaaaagaaaaaaaatcattgaaaggtcaaggcagagtggt
attgaagctgtcagagctgcttttaatttgccagaaacagcatcatgtgaagaagtccaa
gggaagtggcaggatgcccatctctgcaaagaccagagggattttaacatggttgatatg
aaattcaaggaggaagtaaacaattacagcaatgaagtcaacaaggtttgcatgcccctt
ggtctccacaggagttttccagagaacaatttgcagttgatggtacagtcaggagccaaa
ggatccactgtaaacacaatgcagatttcttgtttgctgggccagattgagctggaaggt
cgaagacccccactgatggcatctggcaaatcactgccatgtttccagccttatgatttt
tctcctagctcaggaggatttgtgactggcagatttctcactgggatcagaccttctgaa
ttcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtcaaaaccagc
cgttctgggtacctgcaaaggtgcatcatcaaacatttggaaggactggtagttcagtat
gacttgactgtacgagacagtgatggcagcgtggtgcagtttctgtatggagaagatggg
cttgatatccctaaaactcagttcttacaacctgagcagtttcctttcattgcagaaaac
tatgaggtaatccagaagacaaaccatctggatgaagctttagcaaggatggagtctcac
caagctaaccagcagttcaaagtcatcaagaagtggcgagccagacaccaaaactctgtg
caaagagaaggaggctttctgttattttcccaaaagaaattggcaagtttgaaagcacaa
catccaggaggtgaaatgaagaatggaagagatcctgctactttacagttgttgaagatg
tggtatgagcttgatgagaagaaacaaaggaagtacctgaagaagacaaataagtgtcct
gacccaagccttggggtttggcgtccagatacttattttgcatctgtttcagaaacattt
gaaaatggagtggaaggctatatcaataaatgggaatctgagagcagccggagttatgtg
cacccagcactttcttctgatagattaaaggatctgttgtatttaaagtggcagcgttct
ctttgtgacccaggagaagctgtggggcttcttgctgctcagagtatcggggagccttca
acacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcacattg
ggtattccaaggttgcgagaaatactaatggtggccagcgcaaacattaaaacaccgatg
atgagtgttcctgtgttcagtaccaagaaagctctcaagaaggtgaaacagcttaagaaa
cagctcacgagagtgtgcttagctgaggtcttgcagaaagtggacattgaggaatccctc
catgtgaagcacaagctgaacaagcatcgcctttacaaaatcaaattccatttcttgccc
aatgaatattaccaagaggagaagtgtgtgaagcccaggcaggtcttgcacttcatggaa
acaaggttctttaaagttcttctggaagcaattaaaaggaagactacaaagatggcatct
tttaatgaagtcagcactcggaagacaactcggaaggatttagatgatgaccaagacaag
acaccaaattgtttggaagctgtagcagaggaagaagagaacattgttgatgcagaagct
gatgaaggggatggtgatgctacagaaacaaaacggaggaaaaaccaggaagaagaggtt
gattatgagagcgaagaagagaacggggaagaaaatgctaatgagaatctggaagatgaa
gacgctgaatctgaaaaagaaggggagactcctggtgctgaagaggatcagaaccgagca
gaggaggtttccttggcattgccactgaccaaggtgtactttgacctctcctccctgctg
gcatccctggcacgcagcacagtgatccacgaggtgaagggcatcacacgctgcctgctg
aatgaaagtaccaacaaggagggagagaaggaatttgttctccagacagaagggataaac
ctggcagagctcttcaaatactctgatattttggacctgaacagactttattgcaatgat
atccatgccatggctaagaattatggaattgaatcagccctgagggtgattataaaggaa
ataaaagatgtatttgctgtatatggaattgtggtagaccctcgacacctttcacttgtg
gcagattacatgtgttttgaaggaatttataaaccactgaatcgcattggaattcagtcc
agctcctcccctctgcaacagatgacgtttgaaaccagctacaaattcttgaaggaagca
acaatgatgggcgcccacgatgagctgcgatccccttcggcctgcctggtggttggaaaa
gttgtcaaaggagggactggcttgtttgatctcaagcagcccctgacatag
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integrated database retrieval system
