Cinclus cinclus (white-throated dipper): 134044301
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Entry
134044301 CDS
T10813
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03030
DNA replication
ccic03410
Base excision repair
ccic03420
Nucleotide excision repair
ccic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134044301 (RFC1)
03410 Base excision repair
134044301 (RFC1)
03420 Nucleotide excision repair
134044301 (RFC1)
03430 Mismatch repair
134044301 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccic03032
]
134044301 (RFC1)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134044301 (RFC1)
DNA replication proteins [BR:
ccic03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
134044301 (RFC1)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
134044301 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
Rad17
AAA_22
AAA_30
BRCT_2
RNA_helicase
AAA_5
RuvB_N
AAA_18
AAA_17
AAA_16
AAA_33
AAA_7
nSTAND3
Zeta_toxin
AAA_19
TIP49
NTPase_1
Motif
Other DBs
NCBI-GeneID:
134044301
NCBI-ProteinID:
XP_062349442
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All DBs
Position
5:complement(22590947..22624791)
Genome browser
AA seq
1077 aa
AA seq
DB search
MDIRKFFGVVPPGKRQECETVKKSEKIKNGEGPSSGKKREKETKVNNSPSEDDSKQKRTK
KKRRIIYDSDEDDDFASERISLKPRENGTSGVGCPGTYSVKKEAAKPQAKSKPLSPVKQT
PTSALDFFGTRSVQRSEKKLVASKRKEPSQSRDSTLDDEAIARQLQLEEDSELERQLHED
EEFARTLAMLDETPQKKKARRDTGEQTVLSINSSPNTTTGYKQSERVKATESAGAAKNYS
AKPQTKSEQLKEIAEKERGAQNSLSREKMASGKEEKATPKKEKVSPKKTESISPEDSEKK
RNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGG
KVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKVIDEDGLFDLIRTMPGKKSKYELAAET
EAKKVESKPRKTPQKAESGKRNFSPYKREANNKKYKSTPEKGDAIRSLRKETTTVRKLTD
FKRQTVEDKEDPKPKGNLVSEVNEDGTERLLWVDKYKPVSLKAIIGQQGEQSCANKLLRW
LRNWHKNILEDGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTASLVCKELGYSYVELN
ASDTRSKNSLKEVVAESLNNTSIKGFCSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQEL
IGLIRHTKIPIICMCNDRNHPKMRSLVHYCLDLRFQKPRLEQIKGAMMSIAFKEGLKIPP
PAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFA
TGEETARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICD
GDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGHMSQFPVFPSWLGKFSSTGKHDRIIQ
ELAMHMSLRTQTCKRTVNMEYLSYLRDALVQPLKDLGADGVQQAVTFMDSYCLMKEDVEN
IMEISTWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSSVKASKRQSGSAATLDLSE
DLNVEEIQSDEDEQDTVDSDAMIKQKKVKSSKLPKREKKEETTKKEGKRKEKTRHLE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaaattctttggtgttgtacctcctggaaagcgacaagaatgtgagact
gtgaaaaagagtgaaaaaattaaaaatggtgaaggaccctcaagtgggaagaaaagggaa
aaggagactaaggtgaataattcacccagtgaagatgattccaaacaaaagcggacaaag
aagaagagaaggataatctatgattcagatgaagatgatgattttgccagtgaaagaatt
tccctgaaacccagggagaacgggacatcaggggttggttgtcctggaacatattctgtg
aaaaaagaagcggcaaaaccacaagctaaaagcaaacccctctctccagtgaaacagact
cccacctctgcacttgatttctttgggacgaggagtgtccaacgctcagaaaagaaactg
gtagcaagtaaaaggaaagagccttcacagagcagagacagcacactagatgatgaggcc
attgctaggcaactgcagcttgaagaagattcagagctggagagacagctgcatgaagat
gaagaatttgcaagaactctggccatgttggatgaaacaccacagaagaaaaaggctcgg
agagatacaggagagcaaacagtactgagcatcaacagcagccctaatacaacaacggga
tataagcagtcagaaagagtgaaagcaacagagtcagctggtgcagccaagaattactct
gcaaagccacaaactaaatctgaacagttgaaagagattgctgaaaaggaaagaggtgct
caaaattcactatcaagagaaaaaatggcttcagggaaagaagagaaggcaacaccaaag
aaggagaaggtttctcccaagaagactgagtctataagtcctgaggactctgaaaagaag
agaaacaattaccaagcttaccgaagcttccttaatcgtgagggtccaaaagcactgggc
tccaaagagatacctcagggagctgaaaactgcttggaaggcctgacatttgtaattacg
ggtgttctggagtgtattgagagagatgaggccaagtctctgattgaacgttatggagga
aaagtaactggcaatgtcagcaagaagacaaattacctggtgatggggcgagactgtggc
cagtccaaatgtgagaaggcatcaactttgggcacaaaagttattgatgaggatggtctg
tttgatcttattcgaactatgccaggcaaaaagtccaaatatgaactggcagctgaaaca
gaggcaaagaaagtggagtcaaaacccagaaagacaccacagaaagctgaatctggaaaa
aggaattttagcccctacaaaagggaagctaataataaaaaatacaagtctactcctgaa
aagggagatgccatcagatctctcaggaaagaaaccacaactgttcgaaaacttacggac
tttaaacgtcagactgtagaggataaagaagacccaaagcctaaggggaacttggtttct
gaggttaatgaagatggtacagagagattgctatgggtagataaatataaacctgtatct
cttaaggcaattattggacagcagggtgagcaaagctgtgccaataaactgctccgatgg
ctcagaaattggcacaagaatatcttggaagatggacaagcaaaacccagtaaaactgga
agcaaagatgatgggacaggctttaaagcagcattactctctggtccacctggagttggt
aaaactactacagcttctttagtttgtaaggaactggggtatagctacgtggagctgaat
gccagcgacactcgcagcaagaacagtctaaaggaagtagttgctgaatcacttaacaac
accagcatcaaaggcttctgttctggtgcatcttcatcagttagcgggaaacatgtattg
atcatggatgaagtggatggtatggcaggcaatgaagacagaggagggattcaggagttg
attggtttgatccgacacacgaagatacccatcatttgtatgtgcaacgatcgcaaccat
cctaaaatgcgctccttggtccactactgtttggatcttcgttttcagaaacctcgtcta
gaacagatcaaaggtgccatgatgtctattgcatttaaagaaggtttaaaaattccccca
cctgctatgcaagagataatcctggcagcaaatcaggacatcagacaggttttacataat
cttaatatgtggtgtgcaaaagacaagtcactgacttacgatgaggctaaaacagatgcc
agcagagccaaaaaggacatcaaactgggcccttttgacgttgtccggaaggtttttgct
actggagaggagactgctcgtatgtctcttatagacaaatcagatcttttcttccatgat
tattcactagcacctctcttcgtccaagagaactatgtgcatgtgaaaccagctgctgct
ggaggtaatttaaaaaagcacttggtgctcttgagtagagcagctgatagtatatgtgat
ggtgatatagtggacaggcagattcgtagcaagcagaactggaatcttcttccgacacag
gctatttatgcaagtgttctcccaggggagctgatgaggggtcacatgtcccagtttcct
gtctttcccagctggctggggaaattttcatccacaggcaaacatgatcgtatcattcaa
gaactggcaatgcacatgagtctcagaactcagacgtgcaagaggacagtaaatatggaa
tatttgtcatatttgcgggatgcacttgtccagcccttgaaagacttaggagcagatggt
gtgcaacaagctgtaacatttatggactcttactgcttgatgaaagaagatgttgaaaat
ataatggaaataagcacgtggggaggcaaacccagtcctttttcaaagctggatcccaag
gtcaaagcagcttttacacgtgcctacaacaaagaggcacatctgactccatattcactt
agttctgtcaaggcatctaaaaggcagtcggggtctgcagcaactttagatctgagtgaa
gacttgaatgtggaagagatccagtctgatgaggatgagcaggatactgttgacagtgat
gcaatgattaagcaaaaaaaggtgaagtcttccaagttgccaaaaagagagaaaaaggaa
gaaacaacaaaaaaagaaggaaaaagaaaagagaagacaagacatttagagtaa
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integrated database retrieval system
