Cinclus cinclus (white-throated dipper): 134044798
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Entry
134044798 CDS
T10813
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04140
Autophagy - animal
ccic04142
Lysosome
ccic04148
Efferocytosis
ccic05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
134044798 (VPS39)
04140 Autophagy - animal
134044798 (VPS39)
04148 Efferocytosis
134044798 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
134044798 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccic04131
]
134044798 (VPS39)
Membrane trafficking [BR:
ccic04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
134044798 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Lgl_C
LIF1_N
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
134044798
NCBI-ProteinID:
XP_062350185
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Position
6:complement(26508174..26533121)
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AA seq
875 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQQSDSGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLEHIIHVW
EETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVPAGEEGGDLGDYRKKLLLFLEKS
SWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTSMAENYCHKHYDRNK
DGSKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CTVCKKKIGNSAFARYPNAIVVHYFCSKEVSTLDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttctgctttac
aggatcaagaaagatgtaggttgcaataggtttgaagtgacattagagaaatccaacaag
aacttctcaaagaagattcaacagatccatgttgtttctcagtttaaaattttggtcagt
ctattagaaaataacatttacgtccatgacctattgacgtttcaacaaatcaccacagtt
tccaaggcaaaaggtgcatccctcttcacttgtgatctccagcagtcagattcaggggaa
gaggtgctgaggatgtgtgtggcagtgcgtaagaagctacagctttatttctggaaggac
agagagttccatgaactacagggggacttcagtgtacctgatgtgcccaagtctatggcc
tggtgtgaaaactccatctgtgtaggcttcaagagggactattacctgatacgggtggat
ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccactggtagct
cctgtagcagatggaaaagttgcagttggccaagatgatctgacagttgttcttaatgaa
gaaggggtctgtactcagaaatgtgccttgaattggacagatattcctatagccatggaa
caccagcctccctacatcattgctgttctgccaaggtacgtggagatccgcactttcgaa
ccccggctgctggtgcagagcatcgagctgcagaggccacgcttcatcacctctggaggc
acaaacattatatatgtggcaagtaatcactttgtttggaggctcattccggtgtccata
gccacacagatccagcagcttctgcaggacaaacagtttgagttggctttgcagttggcc
gaaatgaaagacgattcagatagcgagaagcgacagcaaattcaccacataaagaacctc
tttgccttcaaccttttctgccagaagcgttttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattac
aggaaacagctacagtatcccaaccccctgccagggctttctggggcagagctggagaag
gcacatttagctctgatagactacctaactcaaaaaaggagtcagctagtgaagaagctg
aatgattctgatcatcagtccagtacctcacccctcatggaaggaacgcccaccatcaaa
tccaaaaagaagctgctacaaatcattgataccaccctattaaagtgttacctgcataca
aatgtagcattggtggcaccactgctacgtctggagaacaatcactgccatattgaggag
agtgagcatgtactaaagaaggcacacaaatatagtgagctgataatactgtatgagaaa
aagggtctgcatgagaaagcattacaggtactggtggatcagtcaaagaaagccaactca
cctttgaagggtcatgagaggacagtgcagtatctgcagcatttgggcacagagaacttg
cacttggtattttcctactctgtctgggtgctaagagattttcctgaagatggactgaag
atatttacagaagacctccctgaagtggaagctttgccacgagacaaagtgctcagtttc
ttgatagaaaattttaaaagcttgactattccttatctggaacacatcattcatgtctgg
gaagaaactggtgcagactttcacaactgtctgatccagctgtactgtgagaaagtgcag
ggcttaatgaaagaatatctcagttctttccctgcagatagagctccagtgcctgctggg
gaggaaggaggagacttgggggattaccggaaaaagctgcttctttttctggagaagtct
agctggtatgaacctagtcgacttattagtgacttcccctttgatggtctcctagaagaa
cgtgctctgctcttaggtcgaatggggaagcatgagcaagctctgtttatttatgttcat
attttgaaggacaccagcatggctgaaaactactgccataaacattatgacagaaacaaa
gatggcagcaaagatgtgtatctgtctctgctccgcatgtatctctccccacccagtgtt
cattgtctgggacccatcaagatggaagtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggagctgcaccacagcaaactggatactactaaggcaataaacctactc
ccagcaaatacacagattagtgagattcgcatcttcttagagaaagtacttgaagaaaat
gctcaaaagaaaagatttaatcaagtgctcaagaatcttctccatgcagagtttctgagg
gtccaggaggagcggatcttgcatcagcaagtcaagtgcattattacagaggagaaggtg
tgcactgtttgcaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gtcgtgcattatttctgctccaaagaagtcagcacactggacacctga
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