Cinclus cinclus (white-throated dipper): 134044798
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Entry
134044798 CDS
T10813
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04140
Autophagy - animal
ccic04148
Efferocytosis
ccic05132
Salmonella infection
Brite
Membrane trafficking [BR:
ccic04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
134044798 (VPS39)
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GFIT
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NCBI-GeneID:
134044798
NCBI-ProteinID:
XP_062350185
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Position
6:complement(26508174..26533121)
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AA seq
875 aa
AA seq
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MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQQSDSGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLEHIIHVW
EETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVPAGEEGGDLGDYRKKLLLFLEKS
SWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTSMAENYCHKHYDRNK
DGSKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CTVCKKKIGNSAFARYPNAIVVHYFCSKEVSTLDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttctgctttac
aggatcaagaaagatgtaggttgcaataggtttgaagtgacattagagaaatccaacaag
aacttctcaaagaagattcaacagatccatgttgtttctcagtttaaaattttggtcagt
ctattagaaaataacatttacgtccatgacctattgacgtttcaacaaatcaccacagtt
tccaaggcaaaaggtgcatccctcttcacttgtgatctccagcagtcagattcaggggaa
gaggtgctgaggatgtgtgtggcagtgcgtaagaagctacagctttatttctggaaggac
agagagttccatgaactacagggggacttcagtgtacctgatgtgcccaagtctatggcc
tggtgtgaaaactccatctgtgtaggcttcaagagggactattacctgatacgggtggat
ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccactggtagct
cctgtagcagatggaaaagttgcagttggccaagatgatctgacagttgttcttaatgaa
gaaggggtctgtactcagaaatgtgccttgaattggacagatattcctatagccatggaa
caccagcctccctacatcattgctgttctgccaaggtacgtggagatccgcactttcgaa
ccccggctgctggtgcagagcatcgagctgcagaggccacgcttcatcacctctggaggc
acaaacattatatatgtggcaagtaatcactttgtttggaggctcattccggtgtccata
gccacacagatccagcagcttctgcaggacaaacagtttgagttggctttgcagttggcc
gaaatgaaagacgattcagatagcgagaagcgacagcaaattcaccacataaagaacctc
tttgccttcaaccttttctgccagaagcgttttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattac
aggaaacagctacagtatcccaaccccctgccagggctttctggggcagagctggagaag
gcacatttagctctgatagactacctaactcaaaaaaggagtcagctagtgaagaagctg
aatgattctgatcatcagtccagtacctcacccctcatggaaggaacgcccaccatcaaa
tccaaaaagaagctgctacaaatcattgataccaccctattaaagtgttacctgcataca
aatgtagcattggtggcaccactgctacgtctggagaacaatcactgccatattgaggag
agtgagcatgtactaaagaaggcacacaaatatagtgagctgataatactgtatgagaaa
aagggtctgcatgagaaagcattacaggtactggtggatcagtcaaagaaagccaactca
cctttgaagggtcatgagaggacagtgcagtatctgcagcatttgggcacagagaacttg
cacttggtattttcctactctgtctgggtgctaagagattttcctgaagatggactgaag
atatttacagaagacctccctgaagtggaagctttgccacgagacaaagtgctcagtttc
ttgatagaaaattttaaaagcttgactattccttatctggaacacatcattcatgtctgg
gaagaaactggtgcagactttcacaactgtctgatccagctgtactgtgagaaagtgcag
ggcttaatgaaagaatatctcagttctttccctgcagatagagctccagtgcctgctggg
gaggaaggaggagacttgggggattaccggaaaaagctgcttctttttctggagaagtct
agctggtatgaacctagtcgacttattagtgacttcccctttgatggtctcctagaagaa
cgtgctctgctcttaggtcgaatggggaagcatgagcaagctctgtttatttatgttcat
attttgaaggacaccagcatggctgaaaactactgccataaacattatgacagaaacaaa
gatggcagcaaagatgtgtatctgtctctgctccgcatgtatctctccccacccagtgtt
cattgtctgggacccatcaagatggaagtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggagctgcaccacagcaaactggatactactaaggcaataaacctactc
ccagcaaatacacagattagtgagattcgcatcttcttagagaaagtacttgaagaaaat
gctcaaaagaaaagatttaatcaagtgctcaagaatcttctccatgcagagtttctgagg
gtccaggaggagcggatcttgcatcagcaagtcaagtgcattattacagaggagaaggtg
tgcactgtttgcaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gtcgtgcattatttctgctccaaagaagtcagcacactggacacctga
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