Cinclus cinclus (white-throated dipper): 134044805
Help
Entry
134044805 CDS
T10813
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134044805 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134044805 (PATL1)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134044805 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
134044805 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
134044805
NCBI-ProteinID:
XP_062350204
LinkDB
All DBs
Position
6
Genome browser
AA seq
795 aa
AA seq
DB search
MFRYPSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
GLSREPDGPVGNDGDVLGDPGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQ
QPGGLNSSIWSSSAVLQCIRGPLLTQEMPSVSVLDYALPQRPPQARDEERDPSERALPRR
SSSPIIGSPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQ
LCNVPNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNP
KLLQGRVGQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRSVLSLSQHPTRSLH
PSLTIPTLPRPQPQMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSGGDRGGHRSSHQ
EQIRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDYYYQNYFQKLEKLAAAEEVHGDG
PKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEK
QVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSLEGERPALMGERKQKICDMYDNLRGKA
PGQDRLSDDHFMQIMCIRKGKRLVARILPFLAPEQAADMLMATARNLPFLIKKDAQDEVL
PCLLRPFSHVLYHLPLGTVTSLVQQLMNLPQSAAAPTNLHLTAVLQNKFGLSLLYLVLSR
GEELQSSDTNTELMQDNQWTELMLMATRELLRIPQGALAKPVSIPSNLISLFSRYVDQQK
LNLLETKLHLVQGIR
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggactgccccctggacgaggatgaagatgccttccag
gccctgggagaggaggatgaagacatcgaccagttcaatgatgacaccttcggggccggg
gccgtcgatgatgactggcaggaggcccacgagcggctggcagagctggaggacaaggct
gggttgagccgggagccggacggtcctgttgggaatgacggggatgttctgggtgatccc
ggggatgttctgggtgatcctgaggacgcactggccgagcggctcacccggctcgtcatt
gacagtgagctggaagacccagccatcatgcaggccgtgcacaccagggatcccccgcag
cagcctggagggctgaattccagcatttggagcagctcagctgtgctgcagtgcatccgg
ggaccgctcctcactcaggagatgccgtcagtgtccgtgctggattatgccttgccccag
aggcctccgcaggctcgggatgaggagcgggatccgtcggagcgggcgctgccccggcgc
tcctcgtcccccatcattggaagccccccagtccgggccgttcccattggcacccccccc
aaacaggccgccatcccaaactttaaccagcagatcctgtgtcccaagcctgtccacatc
cgagctaccatgcagcagcgttatcctgctccctatggagagaggatgtcccccaaccaa
ctctgcaatgttccgaattcctccctcctgggccatccattcccccacagcgtctctccc
gttctcacacacctgcagagagcccagctgctcggaggagcccaggccggccgaatgtcc
cccagccagtttgcccgggtgtcagggctggtggggagcccgctgccctctgtgaatccc
aagctgctccagggcagagttgggcagatgatgtccccggccggagggttccgtgccttt
tttggggctccccctgccccgcccccctcgcagctgccccaccctccgggccctggatct
cacctgcagaacctgaggtcggtgctgtccctgtcccagcatcccacccgctccctgcat
ccatcactgacaattcccactctccccaggccgcagccccagatgttccggccggacacg
acccatttgcacccccagcaccgccggctcctgcaccagcggcagcagcagaaccggaac
cagcaccggagcctcaacggctccgggggggaccgagggggccaccggagcagccatcag
gagcagatccgtaaggatccctacgccaacctcatgctgcagcgggaaaaggactgggtg
tccaagatccagatgatgcagctgcagagcactgatccctacctggatgattattattat
cagaattacttccagaagctggagaagttggcagccgctgaggaagtgcacggtgatggt
cccaagaaggagcgcactaaactcattacccctcaggtggccaagctggaacacacctac
aagccagtgcagtttgagggctcgctgggaaaactcactgtctccagtgtcaacaacccc
cggaagatgatcgatgccgtggtgacatcccgcagcgaggatgacgagacgaaggagaag
caggtccgggataagaggcgacagactctcgtcaccattgaaaagacgtacagcctcctc
ctggatgtggaggactacgagcgccgctacctcctgagcctggaaggggaacggccagcc
ctgatgggagagaggaagcagaagatctgtgacatgtatgacaatctgagggggaaggca
cctgggcaggacaggctgagcgatgaccacttcatgcagatcatgtgcatccggaaagga
aagcgcctggtggcccggatccttcccttcctggctccagagcaagccgccgacatgctc
atggccacagccaggaatctgcccttcctcatcaagaaggatgctcaggatgaggtgctt
ccctgcctcttgaggcccttttcccacgtcctctaccaccttcccttgggaacagtcacc
agccttgtgcagcagctcatgaacctacctcagagcgccgccgctcccaccaacctgcac
ctcactgctgtgctccaaaacaagtttggtctgtccctgctgtacctggtcctgagccga
ggggaggaattgcagagctcagacacgaacacagagctgatgcaggacaaccaatggaca
gagctgatgctgatggcgacccgggagctcctgcggatccctcagggagccttggcaaag
cccgtgtccatcccctccaacttgatctccctcttctctcgttacgttgaccagcagaag
ctgaacctgctggagacgaaattgcacttagtgcaggggatccggtag
DBGET
integrated database retrieval system
