Cinclus cinclus (white-throated dipper): 134045173
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Entry
134045173 CDS
T10813
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03420
Nucleotide excision repair
ccic04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134045173 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
134045173 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccic04121
]
134045173 (DDB1)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134045173 (DDB1)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
134045173 (DDB1)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
134045173 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
134045173 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
134045173
NCBI-ProteinID:
XP_062350788
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All DBs
Position
6:complement(9369475..9381346)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKSLVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctataactacgtggtgacggcgcagaagccgacggccgtcaatggctgcgtcacc
ggacacttcacctctgcggaggacctgaacctgctgattgccaagaacacccggctggag
atctatgttgtgacagccgaggggctccggcccgtcaaggaagtgggaatgtatggaaaa
accgctgtcatggagctcttccgccccaagggggagagcaaggatttgctgttcatcctg
acggccaagtacaatgcctgcatcctggaatacaagcagaacggggatagcatcgacatc
atcacccgtgcccatggaaatgtgcaggatcgcatcggccgcccctcagagaccgggatc
attgggatcattgatcctgagtgccggatgatcgggctgcgactctatgatggcctcttc
aaagtcatccccctggatcgggagaacaaggaattaaaggccttcaacatccgcctggaa
gagctccaggtcatcgatgtgaaattcctttatggctgccaagctcccaccatctgcttc
gtctaccaggacccccagggccgccacgtgaagacgtacgaggtgtccctgcgggagaag
gaattcaacaaaggcccttggaagcaggaaaatgtggaggctgaagcctccatggtcatt
gcagtgccggagcccttcggcggtgccattatcattgggcaggaatccatcacctaccac
aatggggataaatatctggctattgctcctcccatcatcaagcaaagcaccattgtgtgc
cacaaccgcgtggatcccaacggatcacggtatttgctgggagacatggaagggaggctc
ttcatgctgctcctggagaaggaggagcagatggatggcactgtcaccttgaaggatctg
cgtgtggagctgctgggagagacatccattgctgagtgcctgacctacctggataatgga
gtggtgtttgttggctccaggcttggagattcccagctcgtgaagctcaacgtggacagc
aacgagcagggatcctacgtggtggccatggagaccttcaccaaccttgggcccattgtg
gacatgtgtgtggtagacctggagaggcaaggccaaggccagctggtcacctgctccggg
gccttcaaagagggatcgctgcggatcatccggaacggcattgggatccatgagcatgcc
agcatcgacctgccaggaattaaaggattgtggccactgaggtcggatccgcaccgggag
acggacaacaccttggtgctgtcctttgttggccagaccagggttctgatgttgaacgga
gaggaagtggaggagacagagctcacaggatttgtggatgaccagcaaacgttcttctgt
ggcaacgtggcgcatcagcagctgatccagatcacttctgcctcggtgcgactggtcagc
caggagcccaaatctctggtgagcgagtggaaagagcccaatgggaagaacatcagtgtc
gcttcctgtaacagcaaccaggtggtggtagctgtgggaagagccttgtactacctggaa
atccggccccaggagctccggcagatcagctgcacggagatggagcacgaggtggcctgc
ctggacatcacccccctgggagattccaacgggatgtcccctctctgcgccatcgggctc
tggaccgacatctccgcccgcatcctgaagctcccatcctttgagctgctgcacaaggag
atgctgggaggagagattatccctcgctccatcctgatgacgaccttcgagagcagccac
tacctcctgtgtgccctgggggacggagctctcttctacttcggcctcagcctcgagaca
ggcttgctgagtgacaggaagaaggtgaccctgggcacgcagcccacagtgctgaggacg
ttccgctccctgtccaccaccaatgtgttcgcttgctccgaccgccccaccgtcatctac
agcagcaaccacaagctggtcttctccaatgtcaacctcaaggaggtcaactacatgtgc
cccctcaattccgatggctatcccgacagtttggccttggccaacaacagcactctgacc
atcggcaccattgatgagatccagaagctccacatccgcactgttcccctctacgagtcg
cccaggaaaatctgctaccaagaggtgtcccagtgttttggggtgctctccagccggatt
gaggtgcaggatgccagtgggggcaccacagcgctcagacccagtgccagcacccaggcc
ttgtccagcagcgtgagcaccagcaagctgttttccagcagcacagctccacacgagaca
tcctttggagaagaagtggaagtgcataacctgctcatcattgaccagcacaccttcgaa
gtgctccatgctcaccaattcctgcaaaatgagtatgccctcagcctggtctcctgcaag
ctgggaaaggatcccaacacatacttcattgtgggcactgccatggtgtatcctgaggaa
gcagaacccaagcagggccggattgtcgtcttccactactccgatgggaagctgcagagc
ttggctgagaaggaggtcaagggagctgtgtattccatggtggaattcaacgggaagctg
ttagccagcatcaacagcacggtccgtctgtacgagtggacagcggagaaggaattgcgc
acggaatgcaaccactacaacaacatcatggccctgtacctgaaaaccaagggggatttc
atcctggtgggagacctcatgcgctccgtgctgctcctggcctacaaacccatggaaggg
aatttcgaggagattgcccgggatttcaatccaaactggatgagtgccgtggaaatcctg
gatgatgataatttcttgggagcagagaacgctttcaatctgttcgtgtgccagaaggac
agtgcggccacgacggatgaggagcggcagcacctgcaggaagtgggattatcccacctg
ggagagtttgtcaatgtcttctgccacggatccctggtcatgcagaatttgggagagact
tccacgcccacccagggatccgtgctcttcggcactgtcaatggaatgatcggcctggtg
acatccctgtcagaaagttggtacaacttgctcctggacatgcagaacaggctcaataaa
gtcatcaagagcgtggggaagattgagcattccttctggagatcgttccacaccgaacgg
aaaacggaaccagccacgggattcatcgatggagacctgattgagagtttcctggacatc
agcaggcccaagatgcaggaagtggtggcaaacctgcagatcgatgatggaagcgggatg
aagagggaagccaccgtggacgacctgataaagattgttgaggagctgacccggatccat
tag
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integrated database retrieval system
