Cinclus cinclus (white-throated dipper): 134045204
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Entry
134045204 CDS
T10813
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04137
Mitophagy - animal
ccic04140
Autophagy - animal
ccic04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134045204 (HIF1A)
04137 Mitophagy - animal
134045204 (HIF1A)
04148 Efferocytosis
134045204 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134045204 (HIF1A)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
134045204 (HIF1A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
bHLH_HIF1A
Motif
Other DBs
NCBI-GeneID:
134045204
NCBI-ProteinID:
XP_062350842
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Position
6:complement(56806031..56821066)
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AA seq
751 aa
AA seq
DB search
MRLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKC
MGLTQFELTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRG
RTVNIKSATWKVLHCTGHIRVYDTCGNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDS
KTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQ
VTTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTEC
MLKPVESPDMKMTKIFSKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTIISLDFSSNESD
EQQCDEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALNREVVSKLEPN
TEPLELSFTMPQVQEQPTSPSDASTSQSSPEPSSPNDYCFDVDNDMASEFKLELVEKLFA
IDTEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSSSQSAGTITIFQQ
SQSAAGRAEEVKPAERGDDVKTIVVPSSPMRAVPESSSAPASPYGGGRSQTASPSRAGKG
TVDQVEKPSPGAPSLLTVTLNKRSTALDEELNPKMLALHNAQRKRKMEHDGSLFQAVGIG
SLFQQTGDSGGNASLAWKRVKGCKTNGHSGVEQKTIILLSTDIASKLLGQSMDESGLPQL
TSYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgaccatcagctacctgcgcatgaggaagctgctggatgctggtgagctggag
acagaagccaaaatggagaaggaactgaactgtttctacttgaaagctcttgatggcttt
gtcatggttctgtctgaagatggggacatgatttacatgtctgaaaacgtgaacaagtgt
atgggactcactcagtttgagttgacggggcacagtgtatttgatttcactcatccatgt
gaccacgaggagctgagagaaatgcttacacacagaaatggtcctgtgaaaaagggcaaa
gagcagaacacagagcgcagcttttttctcagaatgaagtgtacactgactagcagggga
agaacagtgaatataaagtctgctacatggaaggtgctgcactgcactggccacatccgt
gtgtacgacacgtgtgggaaccagactcactgtggatataaaaagcctcccatgacctgc
ctggtgttgatctgtgaacctattcctcacccatcaaacattgaggtccccctggacagt
aaaacatttctcagtcgtcacagtcttgatatgaaattctcgtattgcgatgaaagaatt
acagagctgatggggtacgagccagaggagctcctgggtcgctcaatctatgagtattat
cacgcactggattctgatcatctgaccaaaacacaccacgacatgttcacaaaaggacag
gtgacaacaggacagtacagaatgctggccaaacaaggtggctatgtctgggttgaaact
caagcaactgttatatacaacactaagaattctcagccacagtgcatagtgtgtgtgaac
tatgtgttgagtggaattgttcaaaaggacttaattttttcccttggacaaactgagtgt
atgctgaaaccagtggagtctcctgacatgaaaatgaccaaaatattcagtaaagatgac
ctggatgataccaacagcctatttgaaaaacttaaacaggaaccagatgctttaactgtg
ctggccccagctgctggagacacaattatctctctagatttcagcagtaatgagtctgat
gaacaacaatgtgatgaagttcctttgtataatgatgtaatgctcccctcatccagtgag
aaattgcagaatataaatatggcaatgtccccactacctgcctctgaaactacaaagcca
cttcgtagcaatgctgatcctgcactcaatagagaagttgtatcaaagctggagccaaac
acagagccactcgaactttcatttaccatgcctcaggtgcaggagcaaccaaccagccct
tctgatgcaagtaccagccaaagttcacctgagcccagtagtcccaatgactactgcttt
gatgtggataatgatatggccagtgaattcaaactggaattggtggagaaactctttgcc
atagatacagaagcaaaaaatccattctctactcaggaaaccgatttagatttagagatg
ttggctccttacatcccgatggatgacgacttccagctgcgctccttcgatcagctgtcc
ccgctggaaagcagctcctccagctctcagagtgcaggcaccatcaccatattccagcag
agtcagtcggcagcgggcagggctgaggaggtgaagccagcagagcgtggggacgatgtg
aagacgatcgttgtcccttcctcgcccatgcgcgcggtccccgagtccagcagtgccccc
gcctcgccctacggcgggggcaggagtcaaactgcctctcccagcagagcaggcaaagga
acagtggatcaggtggaaaaaccttctccaggagcacccagcttgctaacagtcactctg
aataaaagatctactgcactggatgaagaactaaatccaaagatgctagctttgcataat
gctcagagaaaacgaaaaatggaacatgatggttcactttttcaggcagttggaattggg
tctttattccagcagacaggtgacagtggaggaaatgcatcgcttgcttggaaacgcgta
aagggatgcaaaacaaatggccacagtggagtggagcaaaagacaatcattctactatca
actgacatagcaagtaaacttctagggcagtcgatggatgagagtggactcccccaactc
acgagttacgactgcgaagtaaacgctcccatacaaggcaacagaaacctgctacagggg
gaagaactgctcagagctctggatcaagttaactga
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