Cinclus cinclus (white-throated dipper): 134045331
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Entry
134045331 CDS
T10813
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03013
Nucleocytoplasmic transport
ccic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134045331 (PNN)
03015 mRNA surveillance pathway
134045331 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134045331 (PNN)
03041 Spliceosome [BR:
ccic03041
]
134045331 (PNN)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134045331 (PNN)
Spliceosome [BR:
ccic03041
]
Complex C
Other components
EJC/TREX
134045331 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
134045331
NCBI-ProteinID:
XP_062351041
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All DBs
Position
6:39229711..39239534
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AA seq
695 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKHVDENIRKLTGRDPNDVRPPQNRLLALTGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGASSRLGGERRTRRESRQESDAEDDDIKKPALPSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVAIATERQKRRQEIEQKLE
VQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTK
PHLFYIPGRMCPATQKLMEESQKKMNALFESRRNEFAEQINKMEARPRRQSMKEKEHQEV
QNEEKKEEQNKEQEEGKVAQQVEEMETGNQHNDVEMEEVGEEKGKIGSGSGHSDAEKEQE
EDEQRHDVEMKVEEPTEVRENDKQQDGQHEEVTVVKEESENIQPVDNEQDVAEMHEADSV
EPVENENSKEIEPETECDAQAEKVCNVPSPQKEKGIKTENKAELEETQEKTSEAQTESVA
EALSQPQSVPLEQSPQLSQSTQDTEPQTDKDENAVVSVKVVEAQAEQNQTLSAESKSKTR
SRSRGRAGNKTGHNRSSSSSSSSTSSSTTSASSSSTGSSTSRSSSTSSSTTSGSTSRDSS
SSSSSSSESRSRSRGRGHNRDRKRRRSTDRKRRDASGVDRSHKSSKGGGSRDTKSSKDKS
SRSDRKRSISESSRSGKRTSRSERDRKSDRKDKRR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagcggtgcgcgcgctgcaggagcagctggagaaagccaaggaaagtctcaag
cacgtagacgagaatatccgcaagctcacgggccgggaccccaatgatgtgaggccccct
caaaacaggcttttagccctcacaggccccggtggaggtagagggcgtggaagcttatta
ctaaggcgtggattctcggacagtggaggaggacccccagccaaacagagggatcttgaa
ggtgcatccagtaggctgggtggagaacgtcggacaagaagagaatcacgccaagaaagc
gacgcagaggatgatgatattaaaaagccagcgttgccatcttctgttgttgctacctcc
aaagagcgaacacgtcgagaccttatacaagatcaaaatatggatgagaaaggaaaacaa
aggaatcgacgtatatttggcttgttgatgggcactcttcagaaatttaaacaggagtcc
acagttgctattgctactgagaggcaaaagagacgacaagaaattgaacaaaaacttgaa
gtgcaagcagaggaagagagaaagcaagttgaaaatgagaggcgagaactgtttgaggaa
agacgtgctaaacagacagagctgcggttattggagcaaaaggttgagcttgctcagttg
caagaagaatggaatgaacacaatgctaagataattaagtacataagaacaaagacaaaa
cctcatttattctacatacctggcagaatgtgtcctgctacgcagaagctgatggaagag
tcacagaaaaagatgaatgcactctttgaaagcaggagaaatgaatttgcagagcagatt
aacaaaatggaggccaggcccagaagacaatctatgaaggaaaaagaacatcaggaggtg
cagaatgaagaaaagaaggaagaacagaacaaggagcaggaagagggtaaggtggctcag
caggtggaagagatggagacaggtaatcagcacaatgatgtagaaatggaagaggtaggg
gaggaaaagggaaaaataggttcaggttcagggcatagcgatgcagaaaaagaacaggaa
gaggatgagcagagacatgatgtggaaatgaaagtagaagagcctactgaggtgagggag
aatgacaagcaacaggatggtcagcatgaggaggtcacagttgtaaaagaggaaagtgaa
aacattcagccagtggataatgagcaggatgtggctgaaatgcatgaggcagatagtgta
gaacctgtagaaaatgaaaatagcaaagaaatagaaccagaaacagagtgtgatgctcag
gcagaaaaagtgtgtaatgtgccttctccccagaaggagaaaggtatcaaaacagaaaat
aaagctgaacttgaagaaacacaggagaaaacatctgaagctcagacagaatcagtggct
gaggctctatctcagccacagtctgtgccactagaacagtcacctcagttgtctcagtcc
actcaggatacagagccccagacagacaaggatgaaaatgctgtggtgtctgtaaaggtg
gtagaagcccaggcagagcagaaccagacattgagtgcagaaagtaagagtaagactagg
agtagaagcaggggtagggcagggaacaaaactggtcataaccgtagcagcagcagtagt
agcagtagcacttcaagcagtactaccagtgcgagtagttccagtactggcagcagtacc
agtcggagcagttccaccagcagcagcactacaagtgggagtacgagcagggacagcagc
agcagtagctctagcagcagtgaaagcagaagtcgaagccgaggcagagggcataacagg
gatagaaaacgcagaaggagcacggacaggaagcgaagggatgcttcgggggtagataga
agtcacaagtcctcaaaaggtggtggcagtagagataccaaaagctcaaaggataaaagt
tcgaggtctgacagaaagagatctatatcagaaagtagtcggtcaggcaagagaacttca
cggagtgaaagagaccgtaaatcagacaggaaagacaaaaggcgttaa
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