Cinclus cinclus (white-throated dipper): 134045663
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Entry
134045663 CDS
T10813
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
134045663 (DICER1)
microRNA pathway
RISC loading complex
134045663 (DICER1)
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GFIT
Other DBs
NCBI-GeneID:
134045663
NCBI-ProteinID:
XP_062351502
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Position
6:complement(48179805..48224574)
Genome browser
AA seq
1919 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEISESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEQILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLKELDEALGFLNDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDANETE
MEPIVDDDDIFPPYVLRPDETSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLKDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISLPNSSVVENENYCKHSTIVVPENAAHQGANR
TSSAENHDQMSVSYRTLLNESPSKLQIDISVELAAINGVSYNKNLANGNCDLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYNSENQPKPSNECTLPSNKYLDGNANRSTSDGCPVMA
VTTSTSKTINLSKDRADSEKSPCSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEMTKENMLANGKLDDYNDDEENEDLMWRLPKEETDFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSMGNVQCSSDFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGTLCATRENCNSEQKNLSPNS
ASVANSEPSLCKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFRNKAYL
LQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT
IFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIE
VPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPE
TAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS
NT seq
5760 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcaggactgcagctcatgacccctgct
tcctccccgatgggtccattttttggactaccatggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacaaaaatggaaaaagaactgtgttcttggtc
aactcggcaaatcaagttgctcaacaagtgtcagctgtcaggacacattcagaccttaaa
gtgggagagtattcaagtttggagataagtgaatcatggacaaaagagaagtggagtcag
gaattctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttttgaga
aatgagtatttatccctgtcaaatattaatcttcttgtgtttgatgagtgccatcttgca
atccaggatcatccataccgtgaaattatgaagatctgtgaggattatccatcatgtcct
cgaattttgggattgacagcttccattttaaatgggaaatgtgatcctgctgagttagag
gagaagatccagaaactggagcaaattttgaagagcaatgctgaaactgcaactgatttg
gtggtcttagacagatacacttctcagccatgtgagattgttgtagactgtggaccatat
actgacaaaagtgggttatatggaagattattaaaggaactggatgaagcacttggtttt
ctgaatgactgcaacatatctgtacactcaaaagaaagagattctaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccgtggtgtgcagataag
gtagctgggatgatggtgagagagctgcagaagtatatcaaacatgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtgaccccaaaagtaataaagctg
cttgaaatcttgcgcaaatacaaaccatatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaatcaggataattacgtatcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaagcaagatccagaactggcttacatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtaacaagcagatggaagtagaatttagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaacctacttattgctactagt
attgtagaagagggtgttgacataccaaaatgcaacttggtggtgcgttttgatttgccc
acagagtaccgttcctatgtgcaatcaaaaggaagagctagagcaccaatttccaattac
attatgctagcagatacagataaaatcaaaagttttgaagaagatcttaagacatacaaa
gcaattgagaagatcctccgaaacaaatgctcaaaatctgttgatgccaatgaaactgaa
atggaacccattgttgatgatgatgatatctttccaccctatgtattgaggccagatgag
accagtccaagggttactattaacacagctattggacacataaataggtattgtgctaga
ttaccaagtgatccatttacacacctggctcccaagtgtaagacccgggaattacctgac
catacattttattctactctctacctgccaatcaactcacctcttcgagcttcaattgtt
ggccctccaatgagttgtgcaagactggctgaaagagttgttgctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaggaacttgatttacatgatgaagaagaaaccagcgttccaggaaggcca
ggctctacaaaacgaagacagtgctatcctaaagctattccagagtgtttgaaggatagt
tatcccaaacctgaccagccctgttacttgtatgtaataggaatggtgttaacgactcct
ctacctgatgagctcaacttcaggagacgaaagctgtatcctcctgaggatacaacaaga
tgttttggcatattaacagccaagcctatacctcaaattcctcactttcctgtgtatact
cgctctggagaagttacaatatccattgagcttaagaaatctggttttactctgtctctg
caaatgcttgagttgataacgcgactccaccagtacattttttcacatattcttcgtctt
gagaaacctgcactagagttcaaacctacagaagctgattcagcctattgtgttctacct
ctaaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gagaaatctgaggcacgtacaggcattcccagtacacagtatacgaaagaaatgcctttt
attttcaagttagaagattaccaggatgcagttatcattccacggtatcgaaattttgat
cagcctcatcgattctacgtagctgatgtatacactgatcttactccactcagtaaattt
ccttcccctgaatatgagacttttgctgaatattataaaacaaagtataatcttgatctt
acgaatcttaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaagggaaaagcacttccattaagcagtgctgagaagagg
aaagcaaagtgggaaagtttgcagaataaacagatactggttcctgagctctgtgctata
catcctattccagcatcattgtggagaaaagcagtttgcctccccagcatactttaccgt
ctgcactgccttttgacagcagaagaactaagagctcaaacagccaccgatgctggtgta
ggggttaaatcacttcctgcagatttcagatatcctaacttggacttcggatggaaaaaa
tctattgacagcaaatccttcatctctcttcctaactcctctgtagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacattgctcaatgag
tcacccagtaaactccaaattgatatctcggtagaacttgcagcaattaatggtgtttct
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctaccgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccgtaatggca
gtgaccaccagtacttcaaaaactattaatctttcaaaagacagagcagattctgaaaag
agcccttgcagtgggtactcctcaaaaactcttggtcctaatcctggtctaattcttcaa
gctttgactctttcaaatgctagtgatggatttaacctggaacggctagagatgcttggt
gattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgctcac
gagggacggctgtcatacatgagaagcaaaaaggtcagcaactgtaacttgtatcgcctt
ggaaaaaagaaaggactgccaagtcgcatggtggtgtcgatttttgatcccccagtcaat
tggcttcctcctggttacatagtaaatcaggacaagagcaacactgacaagtgggagaaa
gatgaaatgacaaaggaaaacatgttggctaatggtaaacttgatgattataatgatgat
gaagagaatgaagacctaatgtggaggttgcccaaggaagaaacagactttgaagatgat
tttctggagtatgatcaggagcatatcaaattcattgataatatgttaatgggatcaggc
gcttttgtgaagaaaatttcactctcacacttttcaaccactgattcaaactatgaatgg
aaagcacccaaaaagtcatccatgggtaatgttcaatgttcatcagattttgatgatttt
gactatagctcttgggatgccatgtgctatctggatcctagcaaggctgttgaagaggat
gattttgtagtgggcttctggaatccatcagaagaaaactgtggtgttgatgcaggaaaa
cagtcaatctcctatgacttgcatacagagcagtgtattgctgacaagagcattgcagac
tgtgtggaagccctgttgggctgctatctgaccagctgtggtgaaagagctgctcagctt
ttcctgtgttcattggggctgaaggtgctccctgtaattaaaaagactgattgggaaggc
actctgtgtgccaccagagagaactgtaacagtgagcagaaaaatctttcaccaaattct
gcttctgtagctaattcagagccttctctgtgtaaagacctggagtatggctgtttgaag
attccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcaccttatt
tctggttttgaaaactttgagaagaaaataaattacagttttaggaacaaggcttatctt
cttcaggcatttactcatgcctcttaccattataataccattactgattgttaccagcgc
ttagaattcctgggagatgcaattttggactacctcataaccaagcacctttatgaagac
ccacggcagcactctccaggagttcttactgacctacgatctgctctagtcaataatacc
atttttgcatcgttagctgtaaagtatgactaccacaagtacttcaaagctgtctctcct
gaactgtttcatgttattgatgactttgtgcagtttcaaatggaaaagaatgaaatgcaa
ggaatggattctgagctcagaagatctgaagaagatgaagaaaaagaggaagacattgaa
gtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatggatagt
ggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccactaatagaa
aaattttctgctaatgtgccccgttccccagtgcgagagctgctggaaatggagccagag
acagccaaatttagtcctgcagaaagaacttacgatggaaaggtcagagttacagtggaa
gttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaatctgca
gcagcaagaagagcactgcgaagcctcaaagcaaatcaacctcaggtcccaaacagctga
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