Cinclus cinclus (white-throated dipper): 134046003
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Entry
134046003 CDS
T10813
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccic00536
]
134046003 (COL13A1)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134046003 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134046003
NCBI-ProteinID:
XP_062352188
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Position
7:complement(33801320..33885048)
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AA seq
834 aa
AA seq
DB search
MLEEKSWKGVDEAAFDRGCVAPPRSGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLNEKLKFHLPRHREVRDTHQRC
NCPAGSPGLAERPGLQGDKGAMGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVR
LAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPAGPAGPEGIPGRPGPIGPPGRAGEPGK
PGRDGKGLPGPPGPKGDTGIQGYPGRKGEVGESGLPGARGLPGASGPKGEKGDAGIKGER
GMPGLPGRHGSKGAPGMATAGMKGEPGTPGEKGDSGVPGRMGPPGLPGKRGQRGEKGRAG
DPGLPGLPGPKGEKGIAENALVGAKGEPGPPGLPGPPGPKGEAGDVGQPGATGSQGEKGE
RGSPGDQGPMGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGRPGVAGPPGPPG
QKGEIGLPGPPGHDGEKGPRGKPGETGPPGPHGLPGKDGPPGIKGEPGHVGVRGEKGDKG
EPGQAGSPGLDGPTGEKGDQGIPGPSGLPGPIGLPGLTGEKGEPGERGDKGIPGESISGP
PGPQGPPGPPGLQGVPGPKGEAGIDGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGI
PGPIGVSGPAGPKGERGSKGDPGVAGPMGPAGLPGLQGLPGDKGVRGERGKKGSRGSKGD
KGDQGAPGLDAPCPLGLRGFKGEKGEPGLPGLDGLDAPCPLGEDGLPVQGCWNK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggcgtcgacgaagcagcttttgacagggggtgtgtg
gctccccccaggagcggcgatggggagagatgctgccgcctccctctgctgctgggctcg
gggctgcccggcgtctccctgctctctctggtgctcagtctcctgctgtactttcggacc
tccgacctgcagtcccgcgtgtcccacttggaagcggacagacccacacagctccctgcc
tggctctcggcagaccaaatggagacagctattttgggaagagttgaccaactgctcaat
gagaaattaaagttccacttgccaagacatcgagaagttcgagacacacaccagcgatgc
aactgcccggcaggctcacccggactggctgaacggccaggccttcaaggggacaaaggt
gcgatgggaatccctgggcggccgggactaaaagggcaatctggagagaagggtgctcca
ggagaagctggcatgtctatcatcgggcccagaggtccacccggacagcctggaacaaga
ggttttcctggattcccgggccctattggcttggatggcaaaccgggccatcctggacag
aagggagagatgggtgctgcaggtcccaggggacaacccggacccccaggacaaaaagga
gagaagggtcagtgtgcagagtacccgcacaggctgctgcctctcctcaattcagtgcgg
ctggctccacctccggtcataaagagacgcactttccagggtgaacaaggacaagcgggg
atccaaggtcccccggggccccctggtcccccagggcctgctggaccagccggacctgaa
ggaatcccaggacgtcctgggccaattggaccccctggcagagcgggagaacctggaaag
cctggcagagatggaaagggcttacctgggcctcctggaccaaagggagacactgggatt
cagggataccctggcagaaagggtgaggtgggtgagtcaggcttgcccggtgcccgtggc
ctccctggagcctctggccccaagggtgaaaaaggggatgctggcataaagggggagaga
ggcatgccagggctgccaggaagacatggctctaagggcgctcctgggatggccaccgca
gggatgaagggcgagcctgggactccaggagaaaagggagattctggagtgccagggagg
atgggccccccaggtttgccagggaagagggggcagcggggtgagaaaggacgagccggt
gaccctgggcttcctggactccctggccctaagggagagaagggaattgctgagaatgcc
ttggtgggagctaaaggagaacctggccctccaggtctgcctggaccccctggaccaaag
ggagaagctggtgatgttggtcagcctggtgctacaggatcacagggagaaaagggggaa
cgtggttcaccgggagaccagggacccatgggccccaggggtcccaaaggagagcctggg
aaggacgaaatgatggactatgatgggaacatcagtgaagctctccaggaaatacgaact
ttggccttgatgggacccccaggacgtccaggtgtggctggacctccagggccaccagga
cagaagggtgaaattggcttgccgggtcctccaggccatgacggagaaaagggaccacgt
ggcaagcccggagaaacgggcccccctggccctcacggactgccaggaaaggatggaccc
cctggaataaagggagagccaggccatgtcggggtcagaggagaaaagggcgataaggga
gagccaggacaagcgggctcaccgggtctagatggccccactggagagaaaggagaccaa
gggataccaggaccatcaggattgccagggcccattggacttccaggactgacaggagag
aagggtgagcctggggagcgtggggacaaaggaattccaggagaatcgatatctgggccc
cctggaccccaaggccctccaggacctccaggtctccagggtgttcccggacccaagggg
gaagcagggattgatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacaga
gggccactgggattacccggtgcttcaggtttagacggcaggcctggaccaccgggtatt
ccaggaccaattggtgtttcgggaccagcaggaccaaaaggagaaaggggcagtaaagga
gatcctggagttgcaggaccaatggggcccgcagggcttcctggtttacaaggtctacct
ggtgacaagggagtccggggggagaggggcaagaaaggctctagagggtctaaaggggat
aagggagaccaaggagcacctggattagatgcaccctgtccgttgggtctccgaggtttt
aaaggcgagaagggtgagccggggctacctgggctggacggcctggatgccccatgccca
ttgggggaagatggccttccagttcaaggctgctggaataagtga
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