Cinclus cinclus (white-throated dipper): 134046018
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Entry
134046018 CDS
T10813
Symbol
ERCC6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
134046018 (ERCC6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccic03036
]
134046018 (ERCC6)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134046018 (ERCC6)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
134046018 (ERCC6)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
134046018 (ERCC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DEAD
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
134046018
NCBI-ProteinID:
XP_062352209
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All DBs
Position
7:17439468..17482938
Genome browser
AA seq
1489 aa
AA seq
DB search
MPTHKSLLPDGIQEPESATTSSNDCVHNDENLGTEQENGICDSGAGNSIGIPNSDCQAST
SMAVPLEVPRRAHPLLQINRQQIQSVSCSAHAAELKDLGVDVYDQDVLEQGVLQQVDNAI
NEANKAAKIANASKEYESVLEDLRSCTTSLRHINKIIEELSPQAADNKNVNRKLDSVKRQ
KYNKEQQLKKIKAKQKRLQGILGLTEFGNEANEIEYEEDEEPGPSSLGSMLMPAQETEWA
ELIRTGQMTPFGTKIPQKPERKARQLRLNEASDFEKYLADQAKLSSERRKLSRHKGAKKK
AQAKNVQCVAPAATTKEKSGKALSKTDKRLKKHLRELQKHALQIHSKARIPKEKKYLEAK
KLRHEQEGDSGESEYVPDEEFFDPEAAEEEEEQASSLAENDSDYELKSLSRKRKHLVKKG
FKEAENDADFVPSSEEEEHTPEKHRVRRWRDDGDVDYYKQRLRKWQKERLKDKEHQTAEE
LSEESDVEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIA
FLAGLSYSNMRTRGSNYRYQGLGPTVIVCPATVLHQWVKEFHTWWPPFRVAVLHETGSYT
KSKVKLIQEIASCHGILITSYSYIRLMQDNIHTYDWHYVILDEGHKIRNPNAAVTLACKQ
FRTPHRIILSGSPMQNNLKELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYCNASPVQV
KTAYKCACVLRDTINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTEEQRQIYQNYINSKE
VYQILNGDMQILLGLSTLRKICNHPDFVADSPRILKSVPDAEAEDPNQFGYWKRSGKMIV
VESLLKIWHKQGHRVLFFTQSRQMMQILEVFVRYRNYSYLRMDGTTAVASRQPLVTKYNE
DESIFLFLLTTRVGGIGVNLVGADRVIIYDPDWNPSVDTQARERAWRIGQKKEVTVYRLL
TAGTIEEKIYHRQIFKQFLTNRVLKDPKQNRFFKSNDLYELFTLNSPDVSQGTETSAIFA
GTGSDVQVPKPPHNGTSKRDVHLAENSLHKKIKSSNSYSTTHMKDSPSKAIEMSEETRGS
VEAFDPNSCAKDNAQAATDINSFNKSKEECLESDDKCTSQSTPCSAGSSENAKCLTAMVA
AEGCEAAHADARTDLSLTSDAAGSWENQDAKTEDGQFDNNHYKCISKTKHKVDMLSHDSH
KDKSKKKHHKDAKFEGKRIPHLVKQKQYRRENCDEQDSKKNDDYVLQKLFKKSGVHSVMK
HDAIMDASNPDHVLEEAEASRVAQDALRALRLSRQQCLGAASGVPTWTGTSGLAGAPSGI
KSRFGQKRNSMLLSSHSTCASPAKKHKDGDTVRKQNIKKCSSSEHFSGKSGESSSSALDS
SSLLARMRARNHLVLPQQTRNEGDENHQPAPAPVQGSTEYDELLVDLRNFLAFQARADGE
ASTRELLQEFESKLPAEHSCVFRELLRNICTFHRSPNGEGVWRLKPEFR
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgccaacacacaagagtctcctgccagacggtatccaagaaccagagtctgccaccact
tcaagcaatgattgcgtgcataatgatgagaacttgggaactgaacaggaaaatggcatt
tgtgacagtggtgcgggtaatagtatcggaattcccaactctgactgccaggcttccact
tccatggctgttcctttggaggtgcccagaagagcacatccccttttacagatcaacagg
cagcagattcagtctgtctcatgcagtgcacatgctgctgagctcaaagatttaggagtt
gatgtctacgaccaggacgtgttggagcaaggagttcttcagcaagtagataatgcaatt
aatgaagcgaataaagcagcaaaaatagctaatgcatcaaaagagtatgagtcagtactg
gaggatttaagatcatgtacaacatctctgagacatataaataaaattattgaggaactt
tcacctcaagctgctgacaacaaaaatgttaacagaaaattagattctgtaaaacggcaa
aaatataacaaggagcaacagctgaagaagataaaagcaaaacaaaaacgtcttcaagga
atacttggtttaacagagtttggtaatgaagcaaatgagattgaatatgaggaagatgaa
gaacctggtccatcatcccttggcagtatgcttatgcctgctcaggaaacagagtgggca
gagctcattcgaactggtcagatgactccatttggaaccaaaatacctcagaagccagag
aggaaggcacgacagttaagactaaatgaagcatctgattttgagaagtacttagcagac
caagctaagctgtcatctgaaagaaggaagttatcccgtcacaaaggagcaaagaagaaa
gcacaagccaaaaatgttcagtgtgtggctcctgcagctaccacaaaggaaaaaagtggt
aaagccctctcaaaaacagataagcgcttaaaaaaacacctgagagagcttcagaagcat
gcccttcagattcattcaaaggccaggattccaaaggaaaagaaatatcttgaggccaag
aagttaaggcatgaacaggagggtgatagtggagaatctgagtatgtaccagatgaggag
ttctttgatccagaagcagcagaagaggaagaagaacaggcatcttctcttgctgagaat
gattctgattatgaacttaagagtttatcaaggaaaagaaaacatttggtgaagaagggt
tttaaagaagctgaaaatgatgctgactttgttccaagctctgaggaagaagagcataca
ccagagaaacacagagtgaggcgatggagagatgatggagatgtggactattataaacag
agactaaggaagtggcaaaaggaacgtttgaaggacaaagagcatcaaacagctgaggag
ctttctgaagaaagtgatgttgaatttgaagagggtttcaaagtaccaggatttctcttc
aaaaagctatttaagtaccagcagacaggtgttaggtggctttgggaattgcactgccag
caggcaggaggaattctgggagatgagatgggattgggtaagaccattcagataattgcc
ttcttggcaggtctgagctacagcaatatgaggactcgtggttcaaattacaggtaccag
ggattgggtccaacagtgattgtttgtccagctactgtattgcatcagtgggtaaaagaa
ttccacacttggtggcctccatttagagttgctgtgcttcatgaaactggttcttataca
aagagtaaggtgaaactaattcaggaaattgcttcatgccatggaattttaattacatct
tactcatacattcgactgatgcaggacaacatccacacctatgattggcattatgtcatt
ctggatgagggtcacaaaatccgaaatccaaatgctgcagtcacacttgcatgcaagcag
ttccgcacaccccatcgaatcatcttgtctggctcccctatgcaaaataacctaaaggag
ctctggtccctctttgactttatattcccaggaaagttgggaacactgcctgtgttcatg
gagcagttttctgtcccaataaccatgggaggatattgcaatgcctctcctgtccaggta
aaaactgcttacaaatgtgcctgtgtgttacgggataccataaacccctacctgctgcga
agaatgaaggctgatgtaaaaatgagcctttcacttccagataaaaatgaacaggtcctc
ttttgccgtttgacagaggagcagcgtcaaatctatcaaaattacatcaactctaaagaa
gtttaccagattctcaatggagacatgcagattctcttaggactatcaactttgagaaag
atttgcaatcaccctgacttcgttgctgatagtcccagaattttgaagagtgtgccagat
gctgaagcagaggatccaaatcagtttggatattggaaacgttctggaaaaatgatagtg
gtagaatccttgctgaaaatatggcacaagcaaggtcacagagtgctgttttttactcag
tccagacagatgatgcagatacttgaagtctttgtgaggtacagaaactattcctacctc
aggatggatggcaccacagcagtagcttccagacagcctcttgtaacaaaatacaatgag
gacgaatccatatttctttttctcctaacgacccgtgttggtggcattggagttaacttg
gttggtgctgaccgggttattatttatgatcctgactggaatcccagtgtagacacacag
gctcgggagcgtgcttggagaataggccaaaagaaagaggtgactgtgtataggctgctc
actgcaggtactattgaggagaagatataccacagacaaatcttcaaacagttcttaaca
aacagagtgctgaaagaccccaagcagaatcgcttcttcaaatccaatgacctttatgaa
ctatttactctgaacagcccagatgtgtctcaggggaccgaaacaagtgcaatttttgca
ggtactggttcagatgttcaagtcccaaagccacctcataatggcacttctaaacgtgat
gtccatcttgcagaaaatagcttacacaagaagatcaaatcctccaattcctattccacc
acacacatgaaagattctccttctaaagcaatagagatgagtgaggaaaccaggggaagt
gtggaagcctttgacccaaatagctgtgcaaaagataatgcacaagctgctactgatata
aattcattcaataaaagcaaggaggaatgcttggaaagtgatgacaaatgcacgtcccag
tcgacgccatgcagtgcagggtcttcagagaatgccaaatgtctgactgccatggtggct
gctgaaggatgtgaagcagctcatgcagatgccaggacggatctcagccttaccagtgat
gcagctggctcttgggaaaaccaggatgctaaaactgaagatgggcaatttgataataat
cattacaagtgtatctcaaaaacaaagcacaaggtggatatgctgtcacatgacagccac
aaagataagtctaagaagaaacatcacaaagatgccaaatttgaaggaaagcgcattcct
catctagtcaaacaaaagcaatacagaagggagaactgtgacgagcaagactcaaagaaa
aatgatgattatgtcttgcaaaaacttttcaaaaaatcaggggtacacagtgttatgaag
catgatgccattatggatgcttccaatccagatcatgtgctagaggaagcagaagcgagc
agagtggcccaggacgccttgagagccttaagactctctcgtcagcagtgtttaggagct
gcttctggtgtgccaacctggacaggcacgagtggtcttgcaggtgcaccatcaggaatc
aagagtcggtttggtcaaaaaagaaactccatgcttctttcttcacattccacttgtgca
tcacctgcaaagaagcacaaggatggagatacagtaaggaaacaaaatataaagaagtgt
agctccagtgagcacttcagtggaaaatctggagaatcgtcatctagtgctctggactct
tcatctttactagctcgtatgagggcaagaaaccaccttgttttaccccaacagacaagg
aatgagggtgatgagaatcatcagccagcacccgccccagtccagggttcgacagaatac
gatgagctgcttgtggatctgcgcaacttcctggcattccaggcccgcgcggacggcgag
gccagcactcgggagctgctgcaggaatttgagtccaagctgcctgcagagcactcctgt
gtcttcagagaactgctccgcaatatctgcaccttccacaggagcccaaacggggaaggg
gtctggaggctaaagccagaattccggtga
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