Cinclus cinclus (white-throated dipper): 134046328
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Entry
134046328 CDS
T10813
Symbol
NOD1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04621
NOD-like receptor signaling pathway
ccic05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
134046328 (NOD1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
134046328 (NOD1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccic04054
]
134046328 (NOD1)
Pattern recognition receptors [BR:
ccic04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134046328 (NOD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_6
CARD
NOD2_WH
LRR_4
AAA_16
NPHP3_N
AAA_22
PIF1
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
134046328
NCBI-ProteinID:
XP_062352670
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All DBs
Position
1:41985339..42003233
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AA seq
951 aa
AA seq
DB search
MEGQLCANVDMTVKKPPGASPRSFIALLKVHRELLVGRIRNTQCLIDNLIKNDYFSTEDA
EIVVQFPTQADKVRKILDLVQSKGEEVSEYFIYVLHKVTDAYYELQPWLDEIGYEPSENI
CSKPVVNTDPVSRYCQKLRHELGRDSKFVMLYAQKEEMLLEEIYSNSIMELVSFTNESLG
QVGQLEALFDDAVGLINEDGETVYVYGDAGIGKSILLQKIQSLWARKELDIGAKFFFCFR
CRMFSCFKEDEAICLKDLLFKYNCYPDQDPTEVFHHILQFPHTVLFTFDGFDEIYSNFDL
SSVPEICSPNEPIHPLALLISLLRGKLLKGSKKILTARTGTEIQKNIIRKKVLLRGFSSN
NLKEYTAMFFKDERRRALVSNQLEANPNLCSLCSVPLFCWIIFKCFEHFHSMFDSHELPD
SSVTLTDVFLLMIEVHLNRSVKTSLLKNNIRSQAEMFKSRKESLLALGKMAYKGMENSSF
IFEQEEVSLANISEEDLQLGFLRTVKGYSGCDSQATYEFLHLTLQSFFTALFLVMEEKVG
TKELLEFFNECSSMETTQPTCLRIPWLKKQLAGEDPFQNKEHFNFTNMFLCGLLSGSRQK
LFRHLVSPAVIKRKRKTLITYLGKSMKSRLKGYTRSRLKSYNQVQVQPNFVWMLRCLYET
QSEKVGRMAARRMHANYIKLAYCNAYSADCSAISFVVHHFQKHLALDLDNNNINDYGIKQ
LQPCFSKLAVIRLSVNQITDHGVRILYEELSKYQIVSFLGLYNNQITDVGAKYVAKLIEE
CSSLEYVKIGANKITSEGGKCLAQAIQKSKTMFEIGMWGNQVGDEGAKAFAEALRNHPRL
TNVSLAFNGITTEGGKSIAEAMQHNNSVRIFWLTKNELDDEAAMSFAEMLKVNKKLVHLW
LIQNQITAKGVKCLSEALKENTTIQEICLNGNPISQEEAKAFENEERIICF
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggaaggccaactttgtgctaatgtggacatgactgtgaaaaagcctccgggagcaagc
cctcgatccttcattgctttgctgaaggttcaccgcgagcttctggtcggtaggatccga
aacacacagtgtttgattgataacttgattaagaatgactacttctccactgaagatgca
gaaatcgttgtccagtttcctactcaagcagataaggttcgcaaaattctagacttggtt
caaagcaagggagaagaagtttcggaatatttcatctatgtcctgcacaaagtcactgat
gcttactatgaacttcagccttggctggatgaaataggttacgagccttcagagaatatt
tgtagtaagcctgtggtaaatacagatccagttagcagatattgccagaaacttagacat
gagctgggacgggactccaagtttgttatgttgtacgctcagaaggaggagatgctgctt
gaagaaatctactccaacagtattatggagctggtcagttttaccaatgagagtcttggc
caggtgggtcaattagaagccctttttgatgatgcagttgggctaattaatgaagatgga
gagactgtttatgtctatggagatgcaggaattggaaaatccatcttgctgcaaaagata
caaagcctttgggcccgaaaagaattggacataggggccaagtttttcttctgttttcgg
tgtaggatgtttagctgcttcaaggaagatgaagccatatgtttgaaagacctcctcttc
aaatataattgctacccagaccaggaccccacagaagtgttccatcacatcttgcagttc
ccccatacagttcttttcacttttgatggctttgatgagatctattccaactttgatctc
agcagcgtacctgagatatgctcacccaatgaacccatccaccccctggcactgctcata
agccttctcagaggaaagcttcttaagggatccaagaaaattcttactgccaggacagga
actgagatccaaaaaaacatcattaggaagaaagtgttgcttcgtggtttctccagtaac
aacctgaaggaatacacagctatgtttttcaaagatgagcgacgacgagcactggtatca
aaccagttggaagctaacccaaatctctgcagtttgtgttcagtgcctttattttgctgg
attatctttaaatgctttgagcacttccactccatgtttgacagccatgagcttccagat
agttctgttacattaacagatgtgtttttgctcatgattgaagtccacctgaaccgatct
gtgaaaacaagtttgctgaagaacaatatcagaagccaagctgagatgttcaaatcaaga
aaggaaagtcttctagctttgggtaaaatggcatacaaagggatggagaactcttccttt
atctttgagcaggaggaagtctcattggcaaacatctctgaagaagatttgcaattgggc
tttctcaggacagttaaaggttacagtggctgtgacagtcaggctacttatgagttcttg
cacttaacccttcagtcttttttcacagctttgttcttggttatggaggagaaggtgggt
accaaggagttacttgagtttttcaatgaatgttcttccatggagaccacccagcctact
tgccttcgtatcccctggttgaagaaacaactagcaggggaggatcctttccaaaataaa
gaacactttaattttaccaacatgtttctttgtggcctactttctggatccaggcagaag
ctcttcagacatttagtttcacctgcggtcattaagaggaagagaaaaactctcattaca
taccttgggaagagcatgaaatcccgcctgaaaggctacactcggtccaggcttaaaagc
tacaaccaggtgcaggtgcagcccaactttgtgtggatgctgaggtgcctgtacgagaca
cagagtgagaaggtggggaggatggcagcccgccgtatgcacgccaactacatcaaactg
gcctactgcaatgcctactctgccgactgcagcgccatttcctttgtggtgcaccacttc
caaaagcacctggctctggatctggacaataacaacatcaatgactatggaataaagcag
ctgcaaccttgtttcagcaagcttgcagtgatcaggctcagcgtaaatcagatcacagat
catggcgtaaggatcttgtatgaagaactctccaagtaccaaattgtgtccttcttgggc
ttatacaacaaccaaatcactgatgttggagccaaatatgttgcaaaactaattgaagag
tgttcaagcctggaatatgttaaaataggagcaaacaaaataacaagtgaaggagggaag
tgccttgcccaggccatccagaagagcaagacaatgtttgaaattgggatgtggggtaat
caagttggagacgaaggagcaaaggcatttgcagaggccctgaggaaccaccccaggtta
acaaatgtgagtctcgcattcaatggcatcacgacagagggaggcaaaagtattgctgaa
gccatgcaacacaacaattccgtgaggatattctggttgactaaaaatgagctggatgat
gaggcagcaatgagttttgcagagatgctgaaggtcaacaagaaactggtgcatttatgg
cttatccagaatcaaattacagccaaaggggtgaagtgcctcagtgaagctctcaaggag
aacacgactattcaagaaatctgcttgaatgggaacccaataagccaagaagaggccaaa
gcttttgaaaatgaagagcggatcatttgcttttga
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