KEGG   Cinclus cinclus (white-throated dipper): 134046492
Entry
134046492         CDS       T10813                                 
Symbol
PTCH2
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 2
  KO
K11101  patched 2
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic04340  Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04340 Hedgehog signaling pathway
    134046492 (PTCH2)
SSDB
Motif
Pfam: Sterol-sensing TRA2_N Patched MMPL
Other DBs
NCBI-GeneID: 134046492
NCBI-ProteinID: XP_062352989
LinkDB
Position
8:complement(21274901..21294883)
AA seq 1452 aa
MGAAAAAAANGSGGGGAAPAPPAPXLPFRGAAGGRRRTHCSPSAPAPARPRRAHGGRRRR
ARPHITGVPSPASRPAMPAEPPRAAPPPPLRAARRKPLPEVSEGGSPLSSAGLTRSSPPP
QGRAVGRRTPLWLRARFQALLFALGCRIQRHCGKVLFVGLLVFGALAVGLRVASIETDIE
HLWVEAGSRVSQELRYTKEKLGEESVYTSQMLIQTPKKDGDNILTQEALQLHLEAALAAS
KVQVSLYGKSWDLNKICYKSGVPIIENGMIERMIEKLFPCVILTPLDCFWEGSKLQGGSA
YLPGRPDIQWSNLDPLQLMEELGQFTSLEGFKELLDKAEVGQAYMERPCLDPQDPQCPPS
APNKQSQQSPDIPAELSGGCHGFSRKFMRWQQELILGGTTKDSQGKLLRAEALQTMFLLM
SPRQLYEHFKDDYEIHDISWSEEKAGAILEAWQRKFVELAQDSIPSNATQSVHAFSTTTL
NDIMKSFSDVSVIRVAGGYLLMLAYACVTMLRWDCSKSQGAVGLAGVLLVALSVASGLGL
CSLLGISFNAATTQVLPFLALGIGVDDMFLLAHAFTETSQHIPFKERTGECLKRTGTSVA
LTSVSNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAMVLFVFPAILSLDLHRREKRRLD
ILCCFYSPCSSRVIQIQPQELADANDNHACHPSPYGPPGVATSTQITTTVQAFTRCDPSG
HHIVTVLPPTSQVCTSPAVLLPHTDPLGSQVFAPSSSTRDLLSQLDEAKGGRECVPLPFC
RWSLADFAREKYAPLLLRTRTKVVVVVLFLALLGLSLYGTTMVHDGLYLTDIVPRDTKAH
AFISAQFKYFSFYNMFIVTKGGFHYPGAQAALLSLHQAFSTVKYVVREGNRDLPKMWLHY
FQDWLRGLQATFDRDWQAGRITHDSYRNGSEDGALAYKLLIQTGNKKDPFNFNQLTTRRL
VDENGIIPPDTFYICLTVWASNDPLGFAASQANFYPPPPEWIHDKYDTTGENLRIPAAQP
LEFAQFPFYLSGLRRTSDFVEAIESVRAICREAAQRHGVLSYPSGYPFLFWEQYIGLRHW
FLLAISILLACTFLVCALLLLNPWTAGIIVSILAMMAVELFGIMGLMGIKLSAIPVVILI
ASVGIGVEFTVHVALGFLTAAGSRNVRSAAALEHTFAPVMDGAVSTLLGVLMLAGSEFDF
IMRYFFAVLTILTLLGLLNGLVLLPVLLSVIGPPPEASLVDNGPCLPPPESVPPCLGPGG
LYIRCAPAWPATFPEPSDMEHYTESVGPGSPQGPFIVPPAPAHILLEAGKDPSFPRITVL
KPYKDSLEVQGKKEASGPQPAAPLSFGEPCTTLPQEHLQPGPPGTRPGPSTVLPTYSTHL
QGPAGSYTTVTATASVTVALHPTLPGSYPNFSPEGFTSSERDCLDEPSTSGTTVPNTFEM
QNMGHHGAGARR
NT seq 4359 nt   +upstreamnt  +downstreamnt
atgggcgctgccgcggcggcggcggccaatgggagcggcggcggcggcgcggccccggcg
ccccccgcccccngcctcccctttagaggcgcggcgggcggccggcggcgcacacactgc
tctccatccgcaccggcaccggcacggccccgccgcgcgcatgggggccgccgccgccgc
gctcggccccacataacgggggtgcccagccccgccagccgccccgccatgccggccgag
cccccccgcgccgcgccgccgccgccgctccgcgcagcccgccgcaagccgctgcccgag
gtgagtgagggaggctctcccctctcttctgccgggctgacccgatcctcgccccctccg
cagggcagggccgtgggccggaggaccccgctgtggctgcgggcccgctttcaggcgctg
ctcttcgccctgggttgccggatccagcggcactgcgggaaggtgctcttcgtggggctg
ctggtgttcggggcgctggccgtgggactacgggtggcctccatcgagaccgatatcgag
cacctctgggtggaagcgggcagccgggtgagccaggagctgcgctacaccaaggagaag
ttgggcgaggagtctgtctacacgtcccagatgttgatccagaccccgaagaaggatggc
gataacatcctgacgcaggaggccctgcagctccacctcgaggcggccttggccgccagc
aaggttcaagtctcactgtacggaaaatcgtgggatttgaacaagatctgctacaagtcg
ggcgtccccatcattgagaacggcatgatcgagaggatgatagagaagctgttcccctgt
gtgatcctgacaccgctggactgcttctgggaaggctccaagctgcagggaggctcagcc
tatctcccgggccgcccggacatccagtggagcaacctggaccctctgcagctgatggag
gagctggggcaattcacatccctggaaggcttcaaagagctgctagacaaggcagaggtg
ggacaggcttacatggagcggccctgcctggacccccaggacccccagtgtccccccagt
gcccccaacaagcagagccagcagagccccgacatcccggccgaactctcggggggctgc
cacggcttctccaggaagttcatgcgctggcagcaggagctgattttaggtggcacgacc
aaagactcccagggcaagctgctacgtgccgaggccctgcagaccatgttcctcctcatg
agcccccggcagctctatgagcacttcaaggatgattatgagatccatgatatcagctgg
agcgaggagaaggcaggagccatcctggaggcctggcagaggaaattcgtggagctggca
caggactccattccttccaacgccacacagagtgtccatgctttctccactaccacgctc
aatgacatcatgaagtccttctctgacgtcagcgtcatccgggtggctgggggctacctc
ctcatgctggcctatgcctgtgtcaccatgctgcggtgggactgttccaagtcccaaggg
gctgtgggcctggctggggtcctgctcgtggctctctccgttgcctctggcctggggctt
tgctcactgctgggcatctccttcaatgcagccaccacccaggtccttcccttcctggcc
ctcggcattggggtcgatgacatgttcctcttagctcatgccttcactgagaccagccag
cacatccccttcaaggagcggacaggtgagtgtctgaagcgcacagggaccagtgtggct
ctcacctctgtcagcaatatgatcgccttcttcatggcagccctggtgcccatccctgcc
ctgcgcgccttctccctccaggctgcagtggtcgttgtgttcaacttcgccatggtgctc
tttgttttccctgctatcctgagcctggacctgcaccgccgggagaaacgccggctcgac
atcctctgctgcttctacagcccttgctcctcacgggtcatccagatacagccccaagag
cttgctgacgccaacgacaaccatgcctgccacccgtctccttatgggcctcctggcgtg
gccaccagcacccagatcaccaccaccgtgcaagccttcacccggtgtgacccctcgggc
caccacattgtcactgtcctgccacctacctcccaggtgtgcacctcacctgccgtcctc
ttgccccacactgaccccttgggctcgcaggtcttcgccccatcgagctccacccgggat
ctgctgtcccagctggatgaggccaagggtgggcgggaatgtgttcccctgcccttctgc
cgctggagccttgctgatttcgcccgggagaagtatgccccactccttctgcgcacccgg
accaaggtggtagtggtggtgctgttcctggcactgctggggctgagcctctatggcacc
accatggtacatgatggcctctacctgacagacatcgtgccacgggacaccaaggcacac
gccttcatctcagcccagttcaaatacttctccttctacaacatgttcattgtcactaag
ggtggcttccactacccgggtgcccaggctgccctgctgagcctgcaccaggccttcagc
actgtcaaatacgtggtgcgggagggcaaccgtgacctgccaaaaatgtggctccattac
ttccaggactggctgcgaggactccaggccacctttgacagggactggcaggctgggcgc
atcacccatgacagctaccgcaatggctccgaggatggggcactggcgtacaaactcctc
atccagactggcaacaagaaggaccccttcaacttcaatcagctgaccacgcgacgactg
gtggacgagaatggcatcatcccccctgacaccttctacatctgcctgacagtgtgggcc
agcaacgatcccctgggctttgctgcctcccaggctaacttctaccccccacctcccgag
tggattcatgacaagtatgacaccacgggcgaaaacctgcgaatcccagcagcccagcca
ctggagtttgcccagttccctttctacctgagtgggctgcgtcgcacatctgactttgtg
gaggcgattgagagcgtacgagccatctgccgggaggctgcccagcgccacggcgtgctg
agctaccccagcggctaccccttcctcttctgggagcagtacatcggcctgcggcactgg
ttcctgctggccatcagcatcctgctggcctgcaccttccttgtctgtgccttgctgctg
ctcaatccctggactgccggcatcatcgtctccatcctggccatgatggctgtggaattg
tttggcatcatggggctgatgggcatcaagctgagcgccatccctgtggtcatcctcatt
gcctcggtgggcatcggtgtggagtttactgtccacgtggccctgggctttctgacagct
gcggggagcaggaacgtgcgctcagccgcagcactggagcatacttttgctcctgtgatg
gatggtgctgtctccaccctcctgggtgtcctcatgctggctggctctgagtttgatttc
atcatgaggtatttctttgcggtgctgaccatcctgacgctgctggggctgctcaacggg
ctggtgctgctgcccgtcctgctctctgtcatcgggccaccccctgaggcatccctggtg
gataatggcccctgcctacccccaccagagtcggtacccccgtgtctgggccctggggga
ctgtacatccggtgtgctccagcctggcctgccaccttccctgagccctctgacatggag
cactacacggagagtgtggggccaggcagcccacagggacccttcattgtgccgcctgcc
ccagcacacatcctactggaggctggcaaggaccccagcttcccccgcatcactgtactg
aagccctacaaggacagcctggaggttcaggggaagaaagaggcttctggccctcagcct
gcagcccccctgtccttcggggagccgtgcaccacactgccccaagagcacctgcagccc
ggcccaccgggcacccggccaggcccctccacagtcctgcctacctacagcacccacctg
cagggtcctgccggcagctacaccaccgtcacagccaccgcgtcagtgacagtggccctg
caccccacactgcctggctcctaccccaacttcagccctgagggcttcaccagcagcgag
cgggactgcctggatgaacccagcaccagcggcaccactgtgcctaacaccttcgagatg
cagaacatgggacaccacggggcaggtgcccggcgctag

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