Cinclus cinclus (white-throated dipper): 134046556
Help
Entry
134046556 CDS
T10813
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134046556 (TNR)
04518 Integrin signaling
134046556 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134046556 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccic00536
]
134046556 (TNR)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134046556 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_Dep-1_3rd
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_Dep-1_2nd
Fn3_VIN3
EGF_2
Lzipper-MIP1
TSC22
Motif
Other DBs
NCBI-GeneID:
134046556
NCBI-ProteinID:
XP_062353153
LinkDB
All DBs
Position
8:4332989..4360318
Genome browser
AA seq
1355 aa
AA seq
DB search
MGTDGENLVLRNVVISFNLLLMGAVLKPFECRLEMTTEPAERTAVDGAGGLANCSSPIKE
QPMVFHHIYNINIPLDSCCSSVFKSSAEEVSSEDDRLAEYTEQTSDSESQFTFTHRINMP
KQACKCSTSLPSLQELLSRIEMLEREVSILRDQCTSNCCQENAATGQLDYIPQCSGHGNF
SLESCSCVCMEGWAGSNCSEPRCPRGCSSRGVCLEGQCICDNDYGGEDCSQLRCPAGCGS
RGLCVDGECVCEEGFTGEDCSQLRCPRDCSGRGHCVNGTCVCQEGFTGEDCARPHCPSAC
SGRGLCRDGLCVCQEGYDGQDCSAVSPPENLRVTGISDRAIELAWDSPGAATEYVVSYQP
AVPGGSQLQQRVPGDWSTITITDLEPGVAYNVSIYAVISDVFSVPITSKVMTNLATPQGL
KFKTITETTAEVQWEPFSFPFDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKEQARSPPTSNSVSTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDAILLKYGLE
DGEGGRTTFRLQPPLSQYSLQALRPGARYHLIISALRGANESRPAFAQFTTEIDAPKNLR
VGSRTSASLELAWDNSEAEAHSYRVVYSTLAGEHYHEVLVPRDTGPTTRATLADLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLAWTKATGPIDHYRITFT
PASGMASEVTVPQDESQLTLEELEPGTEYTISIVAERGRQQSLEATVDAFTGVRPISQLH
FSQLTSSSVNVTWSDPSPPADHLILTYRLRDEEEAQQITLNGTCRHTSLTGLLPSTEYLV
SLVAVHGTISSEPVVGSITTGIDAPKDLRVGNVTQESMMVYWSAPIAAFDHYRISYRAAE
GRTDSMAIPRDATEYTLQDLQPATKYEIGVKSVRGREESELASITAYTAMDVPLGVTATN
ITPTEALLQWNPPLLEVESYVLILTCRAVAGETILVDGDNQEYQLTNLLPSTTYTVSMYA
TSGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWVPPVGEIENYIMTYRSTDGSRK
ELIVDAEDTWIRLEGLSETTEYTVHLQAAQNAMRSSLISTTFTTGGRVFANPQDCAQHLM
NGDTLSGVYTISINGDLSQRVPVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFGN
LEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAYAYYDKFSIGDSRSLYKLRIGDYNGT
SGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINW
YHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggggactgatggtgaaaacctggtcctgagaaatgtggtcatcagctttaacttgctt
ctgatgggtgctgtcctcaagccttttgagtgccggctggagatgacaacagagccagct
gagaggacagcggtggatggggcaggtggccttgccaactgcagttcacctatcaaagag
cagcccatggtcttccaccacatctacaacattaacatccctctggacagctgctgctca
tccgtgttcaagtcttctgccgaggaggtgagttcagaagacgaccggctggcagagtac
acggagcagacctccgacagcgagagccagttcaccttcacccacaggataaacatgccc
aagcaggcctgcaagtgctccacctccctcccatccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatcctccgggaccaatgcacctccaattgctgccaa
gaaaatgcagccacagggcagctggattacatcccgcagtgcagcggccacgggaatttc
agcctggagtcgtgtagctgcgtgtgcatggagggctgggcaggcagcaactgctccgag
ccccgctgcccccggggctgctccagccgcggcgtgtgcctggagggccagtgcatctgc
gacaacgactacgggggcgaggactgctcccagctccgctgccccgccggctgcggctcc
cgcgggctctgcgtggacggcgagtgcgtgtgcgaggagggtttcaccggggaggactgc
tcccagctccgctgcccccgcgactgctcgggccggggccactgcgtgaacggcacctgc
gtgtgccaggagggcttcaccggcgaggactgcgcacggccgcactgccccagcgcctgc
agcggccgcgggctctgccgggatgggctctgcgtctgccaggaaggctatgacggccag
gactgctcagcagtgtctcctcctgaaaacctgcgggtgacagggatcagcgacagggcc
atcgagctggcttgggacagccccggggcagccaccgagtacgttgtctcgtaccagccg
gcggtgccggggggcagccagctgcagcagagggtacctggggactggagcactatcacc
atcacggatctggagccaggtgttgcctacaatgtcagcatctacgcagtcatcagtgac
gtcttcagcgtccccattacctccaaggtgatgactaacctcgccacaccgcaggggctg
aagttcaagaccatcacagagacaacggcagaagtgcagtgggagcccttctccttcccc
tttgatggctgggagatcagcttcattcccaagaataatgagggtggtgtgattgcccag
ctccccagcactgtcaccaccttcaaccagacggggctgaagcccggggaagagtacact
gtcaccgtcgtggccctgaaggaacaagccagaagccctcccacctccaacagcgtctca
accctcattgatggcccgacgcagattctggtgcgggacgtctccgacaccgtggccttc
gtggagtggaccccgccgcgcgccaaggtggacgccatcctgctgaagtacgggctggag
gacggggagggcggcaggaccaccttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccccggcgcccgctaccacctcatcatcagcgccctccggggtgccaac
gagagccggccagcctttgcccagttcaccacagagattgatgcccccaaaaatctgcgg
gtgggctcacggacctccgccagcctcgagctcgcttgggacaacagcgaggctgaggca
cacagctacagggtggtctacagtaccctagccggggagcactaccacgaggtcctggtg
ccacgcgacaccggtcccaccacccgggccaccctcgcagatctggtgccaggaacagag
tatggcatcgggatttcagctgtgatggacagccagcagagtgtgccagcaaccatgaat
gccaggactgagcttgacagcccccgggacctcctggtgacagcctccactgagacgtcc
atctcactggcttggaccaaagccacaggtcccatcgaccactaccgcatcaccttcacc
cctgcctcaggaatggcctctgaagtgacagtgccccaggatgagtcacagcttaccctt
gaggagctggagcctgggacagagtacaccatctccattgtcgctgagagggggcggcag
cagagcctggaggccactgtggatgctttcacaggtgttcgacccatctcacagctacac
ttctcccagctgacatcctccagtgtgaatgtcacatggagtgacccatccccaccagca
gaccacctcatcctcacctacaggctccgggatgaggaggaggcacagcagatcacactc
aatggcacctgcaggcacactagcctgacaggcctgctgccatccaccgagtacctggtg
tcactggtggccgtgcacggcaccatcagctctgagcctgtcgtgggctccatcacaaca
gggattgatgcaccaaaggacctcagagtgggcaacgtcacccaggagtccatgatggtc
tactggagcgctcccatcgctgccttcgaccactatagaatatcctaccgtgctgccgaa
gggaggacagacagcatggccatccccagggatgccactgagtacaccctccaggacctg
cagcctgccaccaagtatgagattggggtgaagagcgtgcggggccgggaggagagcgag
ctggcctccatcactgcatacacagccatggatgtccccttgggggtcacagccaccaac
atcactcccaccgaggcgctgctgcagtggaacccgccgctgttggaggtggaaagctat
gtcctcatccttacatgtcgtgcagttgcaggagaaacaattctcgtggatggagacaac
caggaataccagctgaccaacctgctgcccagtaccacctacacagtttctatgtatgcc
accagtgggcctctcaccagccagaccatcagcaccaacttcactactcttttggatcct
ccaacaaatctgaccgccagtgaagtcacacgacggagcgccctgctctcctgggttcct
cctgtgggagagattgagaattatatcatgacctacagatccaccgatggcagccggaag
gagctgattgtggatgctgaggatacatggatccgtctggaggggctttctgagaccacg
gagtacaccgtgcacctacaagctgcccagaacgccatgcggagcagcctcatctcaacc
accttcaccacaggaggacgtgtctttgctaaccctcaggactgtgcccagcacctgatg
aatggagacacgctgagcggggtctacaccatctccatcaacggggacctcagtcagcgg
gtgccggtgtactgcgacatgaccaccgacggaggtggctggattgtcttccagcggcgg
cagaacgggctgactgatttcttccggaaatgggcagattaccgggttggctttggaaac
ttggaagatgagttttggctgggtttggacaacatccacaagatcacatcccaagggcgc
tacgagctgcgaatagacatgagggatggtcaggaagcagcatatgcctactacgacaag
ttctccattggtgactcccggagcctctacaaactgcgaattggagactacaatggcact
tcaggagactccctcacctatcaccagggccgccctttctccaccaaggacagggacaat
gatgttgctgtgaccaactgtgccatgtcctacaaaggggcatggtggtacaagaactgc
caccgcaccaacctcaatggcaagtacggagaatcccggcacagtcaggggattaactgg
taccattggaaaggtcatgagttctccatcccctttgtggaaatgaagatgcgaccttac
aaccaccgtaacatctctgggaggaagcgacggtccttacagctctga
DBGET
integrated database retrieval system
