Cinclus cinclus (white-throated dipper): 134046717
Help
Entry
134046717 CDS
T10813
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04115
p53 signaling pathway
ccic04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134046717 (COP1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
134046717 (COP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccic04121
]
134046717 (COP1)
Enzymes [BR:
ccic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134046717 (COP1)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134046717 (COP1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
134046717 (COP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
zf-C3HC4_2
Beta-prop_EIPR1
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
zf-C3HC4_3
zf-RING_5
Beta-prop_WDR90_POC16_2nd
zf-C3HC4_4
WD40_RFWD3
RING_XB3-XBAT31
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
zf-rbx1
zf-RING_10
zf_C2H2_10
zf-RING_11
Sina_RING
Motif
Other DBs
NCBI-GeneID:
134046717
NCBI-ProteinID:
XP_062353407
LinkDB
All DBs
Position
8:4150476..4275128
Genome browser
AA seq
702 aa
AA seq
DB search
MSGSRPPHPAVPPAATPASSSSSSSSSSSAAMAPGSSSSGGAAARPVLVAAAVSGSGAGL
ARLAAGAARPGGSSAAPGGGGRKRPLLTPLCNGLINSYEDKSNDFVCPICFDMIEEAYMT
KCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRSEEKRLKLDH
SVSSTNGHRWQIIQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLK
VARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPSHSSIIDST
EYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMTRVSDDSRTTSQL
DEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYE
YGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVY
QEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRY
HLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGK
PHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDK
DRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcagccgcccgccgcaccccgccgtgccgcccgccgccactccggcctcttct
tcctcatcctcctcctcctcctcctcggcggccatggcccccggctcgtcctcctcgggc
ggcgcggcggcgcggcccgtgctggtggcggcggccgtgtcggggtcgggtgcggggctg
gcccggctggcggcgggggcggcgcggcccggcggctcctccgcggcgccggggggcggt
ggcaggaagaggccgctgctcactccgctctgcaacgggctcattaactcctacgaggac
aagagcaacgacttcgtgtgccccatctgttttgacatgattgaagaagcgtacatgacg
aaatgtggacacagcttctgctataaatgtattcaccagagcctggaagacaataacaga
tgtcccaaatgcaactatgttgtggacaacatagatcatctttatcccaacttcttagtt
aatgaattaattcttaaacagaagcaaagatctgaggagaaaagactcaaactggaccat
tcagtgagtagcaccaatggccacaggtggcagataattcaagatttgttgggaactgat
caagacaatcttgacttagccaatgtcaaccttatgctggagctactggtgcaaaagaag
aagcagctggaagcagaatctcatgctgcccaattgcagatacttatggaatttcttaaa
gtcgccaggagaaacaaaagagagcaattggagcagatccagaaggagctaagtgttctg
gaagaagatattaaacgagtagaggagatgagtggcctgtactccccagtcagtgaggac
agcacagtgcctcagtttgaggctccttcaccttcacacagtagtattattgactccacc
gagtatagccagcctccaggcttcagtggcagttctcagaccaaaaagcagccatggtat
aacagcacgctcgcctcgcgacgcaagcgcctcacagctcattttgaggacctagagcaa
tgctatttttctaccaggatgactcgtgtctcagatgacagcagaaccaccagccagctg
gatgagtttcaggagtgtctatccaagttcacgcgctacaattctgtccgaccgctggca
acgctgtcttacgctagtgacctctacaatggttccagcattgtatccagtattgagttc
gacagagactgtgactacttcgccattgctggagtgacaaagaagattaaagtgtatgag
tatggtacagtcattcaggatgcagtggatattcactaccctgagaatgaaatgacctgt
aattccaaaatcagctgtatcagctggagtagttaccacaagaacctgctagccagcagt
gactacgaaggcaccgtcatcctttgggatggattcacaggacagagatccaaggtctac
caggagcatgagaaaaggtgctggagtgtggactttaatttgatggaccctaagctattg
gcttcaggctctgatgatgccaaagtgaaactgtggtctaccaacttggacaactcagtt
gcaagcattgaggccaaggctaacgtgtgttgtgtcaaattcagcccatcttccaggtat
cacctagcttttggctgtgcagatcactgtgttcactactatgaccttcgcaacactaag
cagcccatcatggtattcaaagggcatcgcaaggcagtgtcctatgcaaaatttgtgagc
ggggaagaaatcgtctctgcgtcaacagacagtcagctgaagctgtggaatgtaggcaag
cctcactgcttgcgctccttcaagggtcacatcaacgagaagaacttcgtagggcttgca
tccaacggagactacattgcctgtggaagtgaaaataattccctttacttatactataag
ggtctctcaaagacactgctgacattcaagtttgatacagtcaaaagtgtcctggacaag
gaccggaaagaagatgacacgaatgagtttgtgagcgcagtgtgctggagggcacttcca
gatggggagtccaatgtgcttattgctgctaacagtcagggtacaattaaggtactggag
ctggtatga
DBGET
integrated database retrieval system
