Cinclus cinclus (white-throated dipper): 134046926
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Entry
134046926 CDS
T10813
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134046926 (RC3H1)
04121 Ubiquitin system [BR:
ccic04121
]
134046926 (RC3H1)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
134046926 (RC3H1)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134046926 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Serpin
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
Prok-RING_4
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
zf-RING_4
zf-RING_6
zf-RING_10
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
134046926
NCBI-ProteinID:
XP_062353750
LinkDB
All DBs
Position
8:complement(7397420..7469994)
Genome browser
AA seq
1532 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPSRKTSALPNGIVSTGSTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPSVSVTKQLQMVPRGSQLYNAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSAPEPGAPYLEHYGPYLPERVVSPQYPQPQGY
PTLAQPVYPPHYDSRRVYPPVQPYQRDDVVRGSPVPIDIPQAAVPLYVPESRDRYQQTEA
YCPVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAVREQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAVAVQG
AATKSIISDYSPYETHSGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDMKNKLGTTKQTENGQLEPQNKVPAEDLTLTFR
TMRLLVVCLLSVWGLAAPEHYAVEDICTAKPRDIPVNPICIYRNPDKKPQEGEGQEPAKD
KLPESTNPRVWELSKANSRFAVVFYKYLADSKDNRENIFMSPLSISTAFAMTKLGACGST
LQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYKKANKSSELVSANRLFGEKSLVFNETY
QNISEIVYGAKLWPLNFKEKPELSRQIINEWVANKTERRITEVIPEGGIDGLTVLVLVNT
IYFKGHWKSQFPAPNTKLDVFHKASGETCQVPTMYQESKFNYAFQDKVQVLEMPYKGDDI
TMVLVLPSAGTPLEEVERDLTSEKLQGWIDSMKEMSLFVYLPRFRVEDSFSVKEKLRKMG
LEDLFSPENARLPGIIAEGRTDLYVSEAFHKAFLEVNEEGSEASAATAVTISGRSFPMNR
KIFNANRPFLLFIREAALNTIIFMGRIADPCS
NT seq
4599 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaaccatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacacggac
attgaactccttcctgtgaactcagccttgctgcagcttgtgggtgctcaggttcctgag
cagcagccgattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaactggcattgtacctcaaaccactcagcagtgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaagggcgaatcagagccatgcgtgcagcacgatca
ctgggtgaaagaacagtcacagagctcattctccagcatcaaaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggctttaaagctggttctgctggctttagaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagagactggagccgcggttccctcaggcctccaaaacc
agcattgggcatgttgtccagctcctttacagagcctcgtgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacgtacgaagctctgaga
agggaacatgattcccagatagttcaaatagctatggaagcaggtttgcgcattgcacca
gaccagtggtcctcgctgttatatggagaccagtctcacaaatcacacatgcagagtatc
attgacaagttgcagaccccagcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacttgaatcgtcttagacctcacctagagctccta
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatacatgtgccga
gacatgaagcagagaggaggatgtccccggggggccagctgcaccttcgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagaccccttagt
gcctccctgggccaactcaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccagtaggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacacaactgatttctcgagggactgactctggttatgaaactgccctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgttcccaagagctctatttctgccttgcccgtgaatcctcatcctgtgcctgct
cgggtgccagcagatctgccctcagtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagctgtacaatgcacaacaagcagatatgttttatcaagaccccagaggagct
gccccatcgtttgagccagcaccctaccagcaaggagtgtactaccccactcagtccatg
tctcgcttcgtccgacctcctccgtcagcccctgagccgggcgcaccgtacctggagcac
tacgggccgtacctgccggagcgtgtggtgagcccgcagtacccacagccgcaggggtac
ccgaccctggctcagcccgtgtacccaccgcactacgacagccgccgcgtgtaccccccc
gtgcagccctaccagagggacgacgtggtgcggggcagcccggtgcccatcgacatcccg
caggcggccgtgcccctctacgtgcccgagtccagagacagataccagcaaacggaggct
tattgcccggtggctccgcatctcggtcagatcagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgaagaaggaaagagatcatggcccagctggaagagaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcactcagag
gagatttttgtttttgtacagtatttggatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaacgtg
gatagtaaagccgtgcgtgagcagcgactggacatgcagcgacgagcggccgagacaggg
gacgatgacctcattccatttggagaccgaccaactgtgtcaagatttggggccatctct
cgtacttccaaagccatgtaccagaactctgggcccatgcaggccgtggcggttcaggga
gctgccaccaaatccatcatttcagactacagtccttacgaaacccacagtggctgggga
ggctctccatattctcctcatcaaaatataccttctcagggacgtttcaatgacagggag
agactgtccatgtcggatgtggctggacatgggaagcagttgccctcagctgaacgagag
cagcagctgcgcatggagctgcagcaagttgaccatcagatcagccagcagacacaaatg
cggggtctggaggctgttagtaacaggctgctgttgcagagagaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgaacag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagc
atggagagccagtcttcactggatatgaaaaacaagctgggtaccactaaacagacagaa
aatggacaattggaaccacaaaacaaggttccagctgaggaccttacactgacattcagg
acaatgcgtctcttggtggtgtgtctgctcagtgtctgggggctggctgcccctgagcac
tacgccgtggaggacatctgcactgccaagccacgtgacatcccagtgaaccccatctgc
atctatcgcaaccctgacaagaagccccaggagggtgaggggcaagagccagcaaaggac
aagctcccagagtccaccaacccacgggtctgggagctgtcaaaagccaactctcggttt
gctgttgttttctacaagtacctggctgactccaaggacaatcgggaaaacatcttcatg
tcacccctcagcatttccacagccttcgccatgaccaagctcggagcctgtggcagcacc
ctccagcagctcatggaggtctttaaatttgacaccatttcggagaagacatcggatcag
atccatttcttctttgccaagctgaactgccgcctttacaagaaagcaaacaaatcctca
gagctggtatcagccaaccgtctctttggggagaaatctttggtctttaatgagacttac
cagaacatcagtgaaatcgtttatggagcaaaactctggcccttgaacttcaaagagaag
ccagaactttccaggcagatcattaatgagtgggtggctaataagacagagaggcgcatt
acagaagtgatcccagaaggtggtattgatggtctcactgtcttggttctggtcaacacc
atttattttaaggggcactggaaatcgcagttcccagctccaaacacaaaactggatgta
tttcataaagccagtggtgagacctgccaagtcccaactatgtaccaggagtccaagttc
aactacgcattccaggacaaagtccaggtgctggagatgccttacaaaggggatgatatc
acgatggtgctggtcctgcccagtgctgggacaccactggaggaggtggagcgagacctg
acatcagagaaactgcagggctggatagattccatgaaggagatgtctctctttgtctac
ctccctcgcttccgtgttgaggacagcttcagtgtcaaggaaaagctgaggaaaatgggg
ctggaagatctcttcagtccggaaaatgccagactcccaggtatcattgcagagggccgc
acagacctgtatgtgtctgaggctttccacaaagccttccttgaggtgaatgaagaaggc
agtgaggcctcagctgctacagctgtcaccatctctggccgttccttccccatgaacaga
aaaatcttcaatgccaacaggcccttcctgcttttcatccgggaagctgccctcaacacc
atcatcttcatgggcaggatcgctgatccttgctcctaa
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