Cinclus cinclus (white-throated dipper): 134047567
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Entry
134047567 CDS
T10813
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04382
Cornified envelope formation
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134047567 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134047567 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134047567 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134047567 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccic04147
]
134047567 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
ccic00536
]
134047567 (COL4A4)
Exosome [BR:
ccic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134047567 (COL4A4)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134047567 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134047567
NCBI-ProteinID:
XP_062354801
LinkDB
All DBs
Position
10:16227746..16283472
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSSERIKWLITAAWWLLIVFSTQGIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPVGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGLPGENGYMGPRGPYGIPGQKGEKGNSVYISHFGKGLP
GARGDPGPPGMPGPRGPRGITGPSGYPGHPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGILGRGEKGEKGLPGF
PGLQGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLPPIK
GPRGDPGFPGPVGEMGSVGPVGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGPPGQPGRQGLPGLPSVICTDRGIPGEPGAKGQIGLPGRKGAKGE
KGSQGFCSCSAGPPGPRGMQGPPGTQGRKGQMGYPGRHGEKGDPGSSGAVGSPGLPGTPG
FAGQHGEKGEKGDPGRGRIKGLKGERGPTGLPGFPGQRGLDGRDGELGLSGEKGAEGDSG
VAVPGDKGLPGLPGPPGVKGQMGLPGLGLPGSPGARGSPGDFGDMGNVGPPGPKGQKGAT
VCITSPYPGNPGPPGFKGVQGQKGLKGLPGHPGPNGFDGQKGYRGRPGAGIPGPEGFRGT
AGDPGDEGERGSRIDGKNGLPGPPGTDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGSLGSRGHPGPPGSRGPPGLPGNKGPIGFPGETG
SKGIQGPQGFPGLPGMQGSMGVFGVKGEEGKMGLPGPSGECGDMGIKGEMGPPGDSGCIN
LQLEKGQMGDPGFPGEHGLRGERGEKGNTGFRGTRGFPGKNGVPGLPGDQGDIGVMGFPG
SRGLPGPKGLQGITGFQGEPGDQGDVGFPGNPGYPGLTGPKGCKGKRGDPAPVLGPHGRK
GPPGDPGLPGLSGFPGEKGLPGIQGQPGRPGSKGDPGYPGLPGLPGATGPQGLPGERGEN
GKPGILGPPGLQGLPGPQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGETG
PKGDRGEPGWPGISIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGNPGPPGETIFVQGDPGDTGMQGAPGNPGPRGQQGARGPPGSQGREGPKGPMG
AHGPQGPPGALGQPGDQGFPGRPGPRGPTGFIGDPGEPGKVDDSCPTIPGPPGEAGQRGQ
DGSAGLPGPIGHPGPQGIKGEEGSCGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGVPGQPGPQIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTAPLSEEEIQPYISRCAVC
EAPAQAVALHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSETLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatctgaacggattaagtggcttatcacagctgcctggtgg
ctgctaattgttttttcaacccaaggaattgatgggggaggatatgcatacattgatcca
tgtggggggcaggattgttcagtttgtcggtgcttcccagaaaaaggatcaaggggtcag
cctggtgaactgggagctcaaggtccaattgggtccttgggatctacaggaccagttggt
ctgccaggggagaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggcctc
ccaggaagggaagggcccagaggaaagcatggtttggatggctgcaatggctcgagggga
gatccaggacttccaggagaaaacggttatatgggaccaagaggtccttatggaattcca
ggacaaaaaggagaaaaaggaaattcagtttatatttcacattttggaaaaggacttcca
ggggcgagaggtgatcctggaccccctggcatgcctggacctagagggccaagaggtata
acgggcccatctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttgccaggtgagcagggaaatccagggattggagtagatggacaaaagggggagccgggc
gacatcggactgcctgggccacctgggtcaccactgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagaggccca
cgtggacccaaaggcatacttgggagaggagaaaagggtgaaaaaggtcttcctggattc
cctggattgcagggtcatcctggttcttatggacctgcaggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcatacagggggatcca
ggagagaaagggcccccaggtcctcctggagctgttggaactccactgcctcctataaaa
ggtccacgaggagatcctggatttccaggtcctgttggtgaaatggggtcagttggacca
gttggtccttcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggggaccctggtttgcctgga
acaggtgaattaatcccaggaagaccaggatttcctggaccaccaggtccaccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgcaaaaggagag
aagggaagtcaaggcttctgctcatgtagtgctggtcctcctggtccccgtggtatgcaa
ggacctccaggtactcaaggaaggaaaggacaaatgggataccctggaagacacggagaa
aagggtgacccaggctcatctggtgcagtgggatcaccagggctccctgggactcctggt
tttgctggacagcatggggaaaaaggagagaagggtgatccaggaagaggtagaataaaa
ggattaaaaggtgaaagaggacctactgggcttccaggatttccaggccaaagagggctt
gatggcagagatggagaactaggattgtcaggggaaaaaggagctgagggcgattctgga
gtagcagttccaggtgataaaggactccctgggctcccgggacctcctggggtgaaaggc
cagatgggattgcctggattggggcttcctgggtccccaggagccagaggtagccctgga
gactttggtgatatgggtaacgttgggccacctggtccaaaaggccagaaaggtgcaact
gtctgcattacatcaccatatcctggaaatccaggtcccccaggttttaaaggtgttcaa
ggacaaaagggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcaa
aaaggctatcgaggaaggccgggagcaggaatccctggaccagaaggctttcgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggatctagaattgatggcaaaaatggcctt
ccaggtccacctggcacagatggtcagaaagggcttccaggtgacaccacttacggccct
ccaggaatcccaggcaacaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggcaccccaggatttccaggtgccaaa
ggttttagaggcccagagggtgacgtaggagcaccaggctgtccgggcttccctggctcc
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggagacaggggcctggctgggccacct
ggaatcaaaggtctcaaaggctctctgggctcacgaggtcacccaggtcctccaggctca
cgaggtcccccaggacttccaggcaataaaggacccattggcttcccaggggaaacagga
agcaaaggcattcaaggaccccagggattcccaggactcccaggaatgcaaggctcaatg
ggagtatttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgtggagatatgggaataaaaggtgaaatggggcctccaggagacagcggctgcattaac
ctccagcttgagaaaggacaaatgggggacccagggtttcctggggagcatgggctgaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccagggaag
aatggtgttccaggactgccaggtgaccaaggtgacattggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggtctgcaaggaattacaggttttcaaggagaacca
ggtgaccagggtgatgttggctttccaggaaaccctggatatccaggactgactggcccc
aaaggatgtaaaggcaagagaggtgacccagctcctgtgcttggtccacacggtcggaaa
gggcctccaggagatccaggattgccaggacttagtggatttccaggggagaagggttta
ccgggtatccaaggacagcctggaagaccaggatccaagggtgaccctggatatccaggg
ctacctggattgccaggagctacaggtcctcaaggattgccaggagaacgtggagaaaat
ggtaaacctggaattttgggacctccaggattgcaagggttacctggaccccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcagaagggt
tctgcaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaactgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggcccccctgga
gaaaggggattcccaggttttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttcccctggtcctccaggtgatcaaggattacctggctta
gatggaatcagaggtgatcctgggaatcctggtcctcctggagagactatctttgtgcaa
ggagatccaggtgataccggcatgcaaggggcaccaggtaatcctggaccacgaggccaa
caaggagccagaggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gcccatggcccacagggtccacctggtgctttaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggacccacaggttttataggtgaccctggtgaaccaggaaaa
gtagatgattcatgccctacaatcccagggcctcctggggaagcagggcaaagaggacag
gatggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcatgtggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaagggagccgaggagagcaaggatatgctggaccacaaggtccacctggtcag
actggtgtcccaggacaaccaggcccccaaattagatctgcaagtggattcttgctcgtc
ctgcacagtcagtcagacagagaaccactctgcccacaggggatgccaaagttatggact
ggctatagtctgctgtacctagaaggacaagagaaagcccacaatcaagatcttggtctg
gcaggatcctgcctgcctgtgttcagcaccatgccctttgcctactgcaacatcaaccag
gtgtgttactatgcgagccgcaatgacaagtcctactggctgtccagcgccgcgccgctg
cccacggcgccgctgtccgaggaggagatccagccctacatcagcagatgtgctgtgtgc
gaggccccggcacaggcagtggcactgcacagccaggaccagtccatccctccctgccca
ctcaactggaggagcctttggataggatactcttttttgatgcacactggatctggtgac
cagggtggtggacagtccctgatgtcacccggaagctgcctggaagatttcagatcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttctttgctaatgaatatagc
ttctggctgaccaccgtgatgcctgagctgcagtttgcatcagcccccctgtcagagact
cttaaagaagggcaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcac
ggctaa
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