Cinclus cinclus (white-throated dipper): 134047711
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Entry
134047711 CDS
T10813
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04382
Cornified envelope formation
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134047711 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134047711 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134047711 (COL4A3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134047711 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccic04147
]
134047711 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
ccic00536
]
134047711 (COL4A3)
Exosome [BR:
ccic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134047711 (COL4A3)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134047711 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134047711
NCBI-ProteinID:
XP_062355051
LinkDB
All DBs
Position
10:complement(16166098..16222581)
Genome browser
AA seq
1670 aa
AA seq
DB search
MAGGGCPGRLAPVLLLALLCPGRAAAENCVCKGKSPCFCDSTKGSKGEKGFPGVPGPPGQ
RGFPGPEGPPGPQGPKGSPGHTGLVGPKGIRGLPGIPGFSGPPGLPGEPGAVGPPGLPGV
PGCNGTKGDQGFPGPPGRRGAPGLPGVVGIKGEKGCPAEGYSQEYGAKGDPGLPGMPGLQ
GAQGAQGYPGELGPQGPPGPLGMPGQPGPPGPKGLMGLKVIGAKGRKGDTGLTGPPGPPG
TVIVTLSGPDNMTDLKGEKGEKGSRGPPGPMGFTGPVGDSQSEKGDRGEPGAQGKPGKEG
APGPPGLPGQKGEQGKPGLAGRQGAKGMKGNPGPPGACGRTEYYNYVVGEKGDEGAPGPP
GPKGQRGIPGPQGPPGAAGRPGASRPGLRGPPGFPGPKGAKGERGQTGLYIVGPPGLPGI
IGRPGSVGLPGPPGEPGRVTFGTGLPGLPGEPGCTGPPGPPGDTGMRGDDAGVCTDCSYI
PGMPGLPGSPGPHGQDGMPGREGTAGPKGSPGSPGTPGFPGAQGPPGFRGEQGRKGSKGE
PGYVHPEGPKGERGDPGARGDKGRRGSSGFMGRPGSKGSKGSKGEEGLAGSKGDRGLPGL
PGGLGLPGEMGLPGLPGYGPQGVRGFKGSKGIPGPPGLPGEAGLKGETSRATPLPALPGP
QGPHGLPGPPGVPGRVGARGEPGDPGHPGPTGDTGFPGLGFPGNPGSKGDKGLAGVRGPP
GCEGKIGDPGRAGNLGQPGQKGEPGMVIPGEPGIMGSPGGYGSPGSKGEAGLPGLPGLPG
HPGHDGDHGLRGDRGSPGAPGDPGFPGKPAECLIGLPGLLGGQGATGPPGGRGLQGPKGN
PGPPGLSIPGIYGRPGEPGLIGLQGNMGLPGPKGQSGRPGISGLPGARGDPGAMGLLGIP
GLPGMVGRPGSPGIRGSPGFPGIKGRKGFLGEKGEPGDKGFPGPSETLVDTGDKGERGLK
GVQGRMGVRGDKGDVGVQGPPGVDGSEGMPGLPGAKGFMGLPGAPGGQGFPGALGAKGDM
GIPGPKGQKGSPGFPGPSGDPGPPGYGGFPGDKGDPGYPSAGPPGEPGPKGDPGPPGVFG
SKGEKGSEGHPGLTGVPGQRGIRGETGGAGIPGKCGPPGAIGEKARQGHPGQPGVPGPPG
ATGVPGKHGLVGERGTQGQDGMPGPPGVKGEPGPPGRGIPGVQGIPGRRGIKGDMGLPGF
PGPPGVKGHQGDQGPIGPPGLVGLPGFQGTTGVAVTGQKGNRGIPGAHGRPGAPGFPGLP
GLSTLSMKGSKGVRGVDGIPGPRGPAGDIGPPGPKGMEGRLGYPGARGHPGFLGFPGVKG
EKGNQGPPGPQGPEGPRGPKGQHGPPGVSGKTFSIPGSKGPPGLPGIPGTPGDQGVQGIP
GLQGPKGVKGLPGRFGHPGHPGLPGPKGDRGFPGQRGQPGLIGFPGLQGLPGSPGTIIAG
PTRKGFIFTRHSQTTKIPSCPRGTSQIYVGYSLLFVQGNERAHGQDLGTAGSCLQRFSTM
PFLFCSPNDVCSFASRNDYSYWLSTAVVMPPDMAPISGRALEPQISRCVVCEGAAMVIAV
HSQTTIVPACPDGWMSLWKGFSFVMYTGAGSEASGQALASPGSCLEEFRAVPFIECHGRG
TCNYYTNSYSFWLASLSPRRMFRRPVPQTLKAGQLENIISRCQVCMRRPI
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgggggctgccccggccgcctggcgccggtgctgctgctcgccctgctgtgt
ccgggccgcgccgcggcggagaactgtgtatgcaaaggtaaaagtccctgcttttgtgat
agcacaaaaggtagtaagggtgaaaagggctttcctggtgttccaggtccacctggtcaa
agaggctttcctggtccagaaggacctccagggccacagggaccaaagggttctccaggg
catacaggcttagttggacccaaaggtatacgaggactcccaggaatacctggattttca
ggtcctccaggccttcccggtgaaccaggagctgttggtcctcctgggctcccgggtgtt
ccaggatgcaacggcacaaagggtgaccaaggatttccaggtcctccaggtagaagaggt
gctccaggccttccaggagttgttggtatcaaaggagagaaggggtgccctgcagaggga
tatagccaagaatatggtgcaaaaggtgatcctggattaccaggaatgcctggtctccag
ggtgcccaaggtgctcaaggatatcctggggaacttggaccacagggccctccaggacct
ttaggcatgccagggcaaccaggacctcctggacctaagggtcttatgggactgaaagta
ataggagccaaaggaagaaagggtgacactgggttaactggaccccctgggcccccagga
actgtcattgtgacattaagtggaccagacaacatgacggacttgaaaggagaaaaagga
gaaaaaggatcaagaggacccccagggccaatggggtttacagggccagttggtgactct
caaagtgaaaagggtgaccgaggagaaccaggagcacaggggaagcctggaaaagaaggt
gccccaggtccacctggtttaccgggacagaagggtgaacagggcaaaccaggactggct
ggaaggcaaggagctaaggggatgaaaggaaaccctggtccacctggagcttgtggtcga
actgagtattacaattatgtggttggtgaaaaaggggatgaaggagcccccggacctcca
gggccaaaaggtcaacgtggcattcctgggccacagggtcctcctggagctgctggtaga
ccaggtgcgtcaagacctggtctgagaggtcccccaggatttcctggaccaaaaggagca
aaaggagagagaggacaaactggcttgtatattgtaggccctccaggactgcctggtatt
attggcaggcctggttctgttggattaccaggtcctccaggagaaccaggcagagtaaca
tttggaactggcctgccaggacttcctggagagccagggtgtacaggacctccaggacct
ccaggagatactggcatgagaggtgatgatgctggtgtgtgtactgattgtagctacatt
ccgggaatgcctggtcttcctgggtctcctgggcctcatggtcaggatggcatgcctggt
agagaaggaacagcaggtccaaaaggttctccaggttctccaggaacaccagggtttcca
ggggctcaaggacctccaggttttagaggagaacaaggacgtaaaggatcaaaaggtgaa
cctggatatgtacatccagaagggccaaaaggtgagcgaggagatccaggagccagggga
gacaaaggaagaagaggttcaagtggatttatgggaagacctggctctaaaggatccaag
ggttctaaaggtgaagagggattggctggatcaaaaggagatagaggactacctggattg
cctggtggacttgggcttcctggagaaatggggcttcctggactgccaggttatggacca
caaggagtaagaggttttaaaggctctaaaggaatacctggaccacctggattacctgga
gaagctggtctgaaaggagagaccagtagggcaactccattacctgcattgcctggacct
cagggaccacatggtttacctggacccccaggagtgcctggtagggttggagcaagaggt
gagccaggtgatccaggacatccaggaccaacaggtgacacaggctttccagggcttggg
tttcctggaaatccaggttcaaaaggagataaaggacttgcaggagtcagagggccacca
ggttgtgaaggaaagattggagatcctggccgagctggaaacctaggacaaccaggacaa
aagggtgagccaggcatggttattcctggagagccaggaataatgggttcaccaggaggt
tatggcagtcctggctcaaaaggggaagctggacttccaggacttccaggcctaccaggg
catcctgggcatgatggtgatcatggtctaagaggagatcgtggctcacctggagctcct
ggagacccaggttttccagggaaacctgctgaatgtcttattggcctgccaggtttgcta
ggtggccagggagctacaggtccaccaggtggaagaggtttacaaggtccaaaaggaaac
ccaggtcctcctggtttgagtatcccgggaatctacgggaggcctggggaacctggatta
ataggtcttcaaggaaatatgggattacctggtcccaagggacagtctggaagaccagga
atctctggtttgccaggtgcaaggggagatccaggtgcaatgggactgttaggaattcct
ggactccctggcatggttggaagaccaggcagcccaggaatcagaggttctcctggcttc
ccaggaataaagggaagaaaaggctttcttggagaaaaaggtgaaccaggtgataaaggt
tttcctggaccatctgagaccttggttgatactggggacaaaggagaacgaggtttaaaa
ggagttcaaggccgaatgggcgtaaggggagacaaaggagatgttggtgtgcaaggtccc
ccaggtgttgatgggtctgaaggaatgcctggtctaccaggtgccaaaggatttatgggt
cttccaggggctcctggaggacaaggattcccaggtgcactcggagccaaaggggacatg
ggaattccaggtccaaaaggccagaaaggatctccaggctttccaggaccatcaggtgac
cctggtccaccaggctatggtggctttccaggtgacaaaggagatcctgggtacccatct
gctgggcctccaggagaacctggtccaaagggagatccaggtcccccaggagtttttggc
agcaaaggagaaaagggctccgagggtcatccaggacttacaggagtaccaggacaacgt
gggatcagaggggaaactggaggtgcaggaatcccagggaagtgtggaccccctggagct
attggtgaaaaggcacgccagggccacccaggacagccgggagtcccaggccctcctggt
gctactggagtccctggaaaacatggacttgttggtgaaaggggtactcaaggtcaggat
ggtatgcctggtcccccaggagtaaagggagaaccaggaccaccagggagagggatccct
ggtgttcaaggtattcctggacgtagaggaatcaaaggagacatgggactgcctggtttt
cctgggcctccaggtgtgaaaggtcatcagggagatcaaggacccattggacctcctggc
ttagtggggttacctggatttcaaggcaccacaggtgtggcagtcactggccagaaaggg
aacagaggtattcctggtgcacatggaagaccaggtgctccaggttttccaggccttcct
ggtctttccactctcagcatgaaaggaagcaaaggtgtccgaggggtggatggaatacca
gggccaaggggcccagctggtgacattggccctcctggtcccaaaggaatggaaggtaga
ttgggctatcctggtgctagaggtcaccctggatttcttggattcccgggtgtaaaagga
gaaaagggtaatcaaggacccccaggaccacaaggtccagaagggccacggggaccaaaa
ggccagcatggcccacctggagtctctggaaaaacattctccatcccaggaagcaagggt
cctccaggactgccaggaatcccaggaacaccaggtgatcaaggagttcaagggattcct
ggactacaaggacctaaaggagtaaaaggtctaccaggacgttttggtcatccaggtcat
ccaggattgcctggtcctaaaggagacaggggatttccaggacaaagaggacaacctgga
ttgattggctttccaggtctgcaggggttacctggatcaccaggtactatcattgctggt
ccaacaagaaaaggatttatctttacacggcatagtcagacaacaaagattccttcatgc
ccacgtgggacatcccagatctatgttggctattcactgctttttgtacaaggaaatgaa
cgagcacatggacaagatcttggaacagctggtagctgcttgcagaggttcagcaccatg
ccattcttgttctgtagcccaaatgatgtttgtagctttgcttctcgcaatgactactcc
tactggctgtccactgcagtggtgatgccaccagacatggcacccatttctggcagggca
ctagagccccagataagcaggtgtgttgtctgtgaaggagctgcaatggtaatagcagtt
cacagccaaacaaccatagttcctgcatgtccagatggctggatgtctctctggaagggt
ttttcttttgttatgtacacaggtgctggctcagaagcttctggccaagcattggcatct
cctggatcatgtctggaagaatttcgggctgtcccattcatagagtgccatggcaggggg
acgtgcaactactacacaaattcctacagtttctggttggcatcattaagtccaagaaga
atgttcaggcgacctgtgccacagactttgaaagcaggacaactagaaaatatcatcagt
cgttgtcaggtctgcatgaggagaccaatctaa
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