KEGG   Cinclus cinclus (white-throated dipper): 134047811
Entry
134047811         CDS       T10813                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic03030  DNA replication
ccic03410  Base excision repair
ccic03420  Nucleotide excision repair
ccic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    134047811 (RFC4)
   03410 Base excision repair
    134047811 (RFC4)
   03420 Nucleotide excision repair
    134047811 (RFC4)
   03430 Mismatch repair
    134047811 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccic03032]
    134047811 (RFC4)
   03036 Chromosome and associated proteins [BR:ccic03036]
    134047811 (RFC4)
   03400 DNA repair and recombination proteins [BR:ccic03400]
    134047811 (RFC4)
DNA replication proteins [BR:ccic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    134047811 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    134047811 (RFC4)
Chromosome and associated proteins [BR:ccic03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    134047811 (RFC4)
DNA repair and recombination proteins [BR:ccic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     134047811 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    134047811 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 AAA_lid_RFC1 Rad17 AAA_16 AAA_11 AAA_22 AAA_30 SLFN-g3_helicase Mg_chelatase DUF815 AAA_14 AAA_24 RuvB_N AAA_19 AAA_5 TIP49_C CH_2 AAA_28 DNAX_ATPase_lid ResIII AAA_7 ParB
Other DBs
NCBI-GeneID: 134047811
NCBI-ProteinID: XP_062355216
LinkDB
Position
10:8367657..8379790
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKSAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLISEGFA
VAQLVNQLHDTVVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLVSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagagcgcggcagggagcagcggggagggcaagaggaccaaacctatcccctgggtggag
aaatatcgccccaaaaatgtggatgaagttgccttccaggatgaagttgtagccgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
gggaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
caaagagtccttgagttaaatgcttctgatgagcgtgggatccaagtgattcgggaaaaa
gtgaaggcttttgctcagctaacggcatctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacatctcgatgctccaaattccgcttcaagcctttg
tctgacagtatccaacagcagaggctgttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcagtatcgtacctggtgaaagtgtcagaaggggacttaagaaaagcaatt
actttccttcaaagtgccactcgcctaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtcatccccaaagaaacaattgatgagctgctattgggctgccag
agtggttcctttgagaaactagaaacactggcaaagaatctcatcagtgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacactgttgtggagagcgaagattacagtgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagatggt
gctgatgaattcttgcagctggtgagtctctgtgcccttgtgatgcagcagctcacacag
aacacctga

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