Cinclus cinclus (white-throated dipper): 134047988
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Entry
134047988 CDS
T10813
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134047988 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134047988 (DROSHA)
03009 Ribosome biogenesis [BR:
ccic03009
]
134047988 (DROSHA)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134047988 (DROSHA)
Enzymes [BR:
ccic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
134047988 (DROSHA)
Messenger RNA biogenesis [BR:
ccic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
134047988 (DROSHA)
Ribosome biogenesis [BR:
ccic03009
]
Eukaryotic type
90S particles
RNase
134047988 (DROSHA)
Prokaryotic type
rRNA processing factors
134047988 (DROSHA)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
134047988 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Cro
5_3_exonuc
YcaO
Motif
Other DBs
NCBI-GeneID:
134047988
NCBI-ProteinID:
XP_062355507
LinkDB
All DBs
Position
1:71609712..71680017
Genome browser
AA seq
1335 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARTSTQTYRPQNLRQLHPQQPSVQYQYEQQAAPPTTYSNPPTT
GYMPPRPDFVPYPPPVSPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPTPPPVPNPSS
TPVPGSPAGQSTFPYMMPPPTVPHPPPPVMPQQVSYQPVYSAGYSQQAFPPPGFSSYQHG
SGSFPSSTASSSASSSHFRHTGQYQGEKSQSDRRSPDRSKHYDEHRHREHGHVHGDRHRS
ANHGDRRDRGRSPDRRRQESSRHRTDYDRGRLSPHHRSYERNRERERERHRHRDSRRSPS
PDRSYKKDYKRAGSRSPSRERKKTRWEEDRERWSENQSSSKEKNYTAVKDKESEENASEK
NEEEDEELLKPVWVRCTHSENYYSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAKA
KAARPPWEPPKTKLDEDLESSSESECDSEDDSSCSSSSDSDVIDVIAEIKRKKAHPDRLH
EELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITVS
PPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPEN
FCVRGLELFSSYLFKDILELYDWNLKGPSLENDSVSCPRYHFMPRFVRFLPDGGKEVLSM
HQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDR
EQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLS
QREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMHL
DKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHIHMRK
KGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATY
RTAIVQNQHLAMLAKKLELERFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEE
AKQLFGRLLFNEKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFT
HVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRS
SLVNNRTQAKVAEELGMQEFAITNDKTKRPVTLRTKTLADLLESFIAALYIDKDLEYVHT
FMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYT
VAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKELRWER
EHQERESEETEEARK
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctgggcgaggatgtccccgtggccaggggggaccaggagcaagaact
tcaacacagacctaccgccctcagaacctccggcagcttcacccccagcagccctccgta
cagtaccagtatgagcagcaagctgcccctccaacaacctactccaaccctccaaccacc
ggttacatgcctcccaggccagactttgtgccctatcctcctccagtgtccccttccaca
caaaatcccatcagccagtgtccaatgaggccaccgtttcccaaccaccagatgaggcag
agcttcccagtgcctccatgtttccctcccactcctccaccagtgccaaatcctagcagc
actcccgtgccaggatcgcctgctgggcagagcacctttccttacatgatgcctcccccc
acggtaccacaccctcccccaccagttatgccacagcaggtcagctaccagcccgtgtac
tcggcgggctactcgcagcaggccttccctccacccggcttcagcagctaccagcacggc
tccggctccttcccaagcagcactgccagcagcagcgccagcagcagccacttccggcac
acggggcagtaccagggagagaagtcccaaagtgaccggcgctccccagacaggagcaag
cactacgacgagcaccggcaccgcgagcacggtcacgttcacggtgacagacatcgctcc
gctaaccacggggatcgtcgggatcgcggccgcagcccggacaggaggaggcaggaaagc
agtcggcaccggacagattatgacagaggaaggctatcacctcatcacaggagttatgag
agaaacagggagcgggagagggagaggcatcggcaccgtgacagcagaagatcaccatca
ccagacagatcctacaaaaaggattacaagagagcaggaagccggtctccaagcagagag
agaaagaaaacccgatgggaggaggacagagaaaggtggtctgagaaccagagctccagt
aaagagaaaaattatactgctgtcaaagacaaagaatcagaagaaaatgcatctgaaaaa
aatgaagaggaggatgaggaattgcttaagccagtctgggttcgctgtacccattctgaa
aactattattccaatgaccctatggatcaagtgggggactctactgtggtaggaacaagc
aagctccgggatctgtatgaaaagtttgacgaggagttaggaaagcgacaggcaaaggcc
aaagcagccaggccaccatgggagccaccaaaaaccaagctggatgaagatttggagagc
tccagtgagtcagagtgtgactctgaagatgacagcagctgctccagcagttcagattca
gatgttattgacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgtctccac
gaagagttgtggtacaatgatccaggacagatgaatgatggacctttgtgcaagtgcagt
gctaaagcccggcgaacaggaataagacatggcatttatcctggtgaagagcccattaaa
ccatgtcgccccatgaccaacaatgctggaaggctataccactaccgaattactgtgtca
cctcccacaaatttcttaacagacagacctactgttattgaatatgatgaccatgaatat
atctttgaagggttctccatgtttgcacatgccccactaacaaatattcctctatgcaaa
gtaatcaggtttaacattgactatacaattcatttcattgaggagatgatgcctgagaat
ttttgtgtgagaggccttgaactgttctcttcatatctattcaaagatattttggagttg
tatgactggaatcttaaaggtccttcacttgaaaatgattctgtttcctgtcccagatat
cacttcatgccacggttcgtgagatttcttccagatggaggaaaagaagtgctctcaatg
catcagattcttctctacttgttacgatgcagtaaagctctggtgcctgaagaggagatt
gccaacatgcttcagtgggaagaactggaatggcagaagtacgcagaagaatgcaaaggg
atgatcgttaccagccctggcatgaaacccagctcagttcgtattgatcaactagaccgc
gaacaattcaatcctgatgtaattactttccctataattgtgcactttgggatacgacct
gcgcaactcagttatgctggagatcctcaataccaaaagctgtggaagagttatgtgaag
ctgcgtcacctactggctaatagtcccaaagtcaagcaggctgataaacagaaattatca
caaagagaggaagcactgcagaaaattcgtcagaagaacacaatgagacgggaagtgact
gtggagttgagcagccagggattctggaaaacagggatacgctctgacgtctgccagcat
gcaatgatgcttcctgtcctgacccatcatgtgcgctaccatcagtgtctgatgcacttg
gacaaattgataggctacacttttcgagataggtgcttactgcagcttgcaatgactcac
ccaagccatcacttaaattttggaatgaatccagatcatgccagaaattccttatccaac
tgtgggattcgacagcctaagtatggagatagaaaagttcaccatatacacatgagaaaa
aaagggataaacaccctgataaatattatgtcccgtttgggacaggatgatccagctcct
tccaggattaaccacaatgagcgtttagaatttctgggagatgctgtggtggagttctta
acaagtgtccacttatactacctgttccccactctggaggaaggaggactagctacatac
cgcactgccattgtgcagaaccagcacctggccatgctggctaagaagctagaactggaa
cgattcatgctctatgctcatggtccagacctttgcagggaatcagatctccgccatgcc
atggccaactgctttgaagccctaataggagctgtttatctagagggaagcttagaagaa
gcaaaacaattatttggacgtttgctcttcaatgaaaaggacctgcgggatgtatggctt
aattatccactacacccactccaactgcaggagtccaatactgacaggcaactcattgag
acctctccagttcttcaaaagcttacggagtttgaggaggcaattggagtcatctttact
catgttcgccttctagcacgtgcattcactctgaggacagtaggctttaaccatctgact
ctaggccacaaccagaggatggaattcctgggtgactctataatgcagttggtagccaca
gagtatttattcatacatttccccgatcatcatgaagggcacttaacgctgttgagaagt
tcattggtgaacaacaggacacaggccaaggtggcggaagagctgggcatgcaagagttt
gccatcactaatgacaagacaaaaagacctgtaactcttcgaactaagactttggctgat
ctcttggaatcctttattgctgccctgtacattgataaagatttggaatatgttcacact
ttcatgaatgtttgcttttttccacggctaaaggagtttattttaaatcaagattggaat
gatcctaaatctcagcttcagcagtgctgcttgactctcaggacagaaggaaaagagccg
gacattcctctttacaagaccttgcagacagtgggaccttctcatgccagaacatacaca
gtagctgtttacttcaaaggggaaagaataggatgtggtaaaggtccaagtattcagcaa
gcagaaatgggagctgcaatggacgcacttgaaaaatataactttccccagatggcccat
cagaaacggttcattgaacggaagtacagacaagagttgaaagaattgaggtgggaaaga
gagcatcaagagagagagtcagaggagactgaagaagcaaggaaataa
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integrated database retrieval system
