Cinclus cinclus (white-throated dipper): 134048523
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Entry
134048523 CDS
T10813
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
134048523 (CHD9)
BRITE hierarchy
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134048523
NCBI-ProteinID:
XP_062356314
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Position
11:complement(10980045..11051736)
Genome browser
AA seq
2911 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSNAFTSQTGTKQETTEHMLNPNTPLNSSTFQMLHSAHPQGNFSSSKLSPVNINFPAS
TGSASQISHFTDPIESNGFTSLDDNLLHQVETHSEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTPPSELVRAPSQSQIHPWHSSVSNQHLQGRSRAALQGQE
LQSCTTVRQQNSQHPISLSSPPSKKTDGSGSYTKLQNTQVRAMSEKKQKKKTDSESKQEK
ANRIISEAIAKAKERGERNIPRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTG
SSSKIKEKTKIGKLIITLGKKQKRKNESSDELSDAKQTPQQPLKDEDSQKRRSNRQVKRK
KYAEEGEGKQSEEEAAKVSVKIKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIK
KEISAGMTVDTEEFFVKYKNYSYLHCEWATEQQLLKDKRIQQKIKRFKVRKAQRAHFFAD
MEEEPFNPDYVEVDRVLEVSLCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIE
EFEQLQASRPDSRRLDRPPPNSWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCI
LADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSM
ISRQMIQQYEMYFRDSQGRIVRGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRL
KNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLK
TEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLS
KGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYSPNAPDFHLQAMIQSAG
KLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID
RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVK
VYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYG
AIMDEEDEGSKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNF
WQKWAKKAEIDIDAISGRNSLVIDTPRIRKQTRPFSATKDELAELSEVESEGDEKPKLRR
PCDRSNGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVH
YRGDEKIKSFIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWL
RKYNPEHLLQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNEFQKVFDGTDASEIDVWV
PEPDHSEVPAEWWDADADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQ
RANDYMDGDVEDPEYKPAPALFKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALT
TRLRRLITAYQRTSKNRQAQQLQPTFPVQTSMMQLPYEEAALNPKMAAKIERQQRWTRRE
EADFYRVVSTFGVVFDPERGRFDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPS
KEELVDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWE
CGTHDRDLLIGAAKHGVSRTDYHILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMA
LSSSPLTPQSRLSDAKVNAFEDTKAKIENLKEDPQSSEEESMSTEETQTVLKSEPLSPKN
GTPIQITDHRPSVKAETDRRMVAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSC
SSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEE
EAQKRAEGTPHIKAYDEESVASLSTTQDETQDSFQMNNGTPNSGYLLQGGYMLAASYWPK
DRVMINRLDSICQTVLKGKWPSARRSYDSTTVASFYTTKLLDSSGAAAEYSEPSAPTPPL
AAVKEEYDQSPQLSKVKKHVREKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQ
QYLARLRELQNASETSLVNFPKSLPKSGTSSHLTASANGVIVDSQPVVKKRRGRRKNVEG
VDVLFMNRNKQPNHVNPGINSCQVAAGINPALTYTQSQGMLDAESPVPVINLKDGTRLAG
DDAPKRKDLERWLKEHPGYVEDSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEER
VQLINRRNARKVGGAFAPPLKDLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFERILTG
PVVREEVSRRGRRPKSEIAKATAAAAASAGVSVSPLLANGLLPGVDLPGLQALQHNLQNL
QSLQVTAGLMGMPAGLAAAGEAKNVAAMFPMLLSGMAGLPNLLGMGGLLTKSTEPVSEEK
KGNDSKETDTKKERTEDQNTDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGML
LTPGLNLHIPALSQSNIFDVQNSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNEN
STDEGSEKADASSGSDSTSSSSEDSDSSDED
NT seq
8736 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgaatttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcaattc
aactgttcaccagttcatccgcaaaaccagtccaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcatcaaactgccacaactgtttccaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacggccgcagcag
agcaggaacaacacggggcaggatgctctgagtcagccgaaagacttcatggaagttaac
gtgtccacttccctcagagtcagtgttaaccacccaccttcagtttctaatccatcgact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtgcttcaatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccgtgttctgtc
agtaatagtcaacaattttcatctccgtattcctactctaataatcacatttctcctacc
agccttcttcagcctacaacggctctttctactagccagcagacacactctatctctgac
ttcactggaagcaatgcctttacatctcaaacagggaccaagcaagaaacaactgagcac
atgttgaatcctaatacacctttgaattcaagtacttttcaaatgttgcactctgcgcat
cctcagggcaactttagtagttcgaaactctctcctgtgaatattaattttccagcttct
actggttctgcttctcagataagccatttcaccgaccctattgaaagcaacggttttaca
tctttagatgacaacttacttcatcaggtggagactcacagtgaaccattcacaggactt
gacccggatgacctcctgcaggaagaccttctgccacagtttgatgactctgcgtttgtt
caggatagcacaagccatgttctagagcatgacctagaacaccacataactccacagcaa
gtgacaccaccatccgaacttgtccgggccccttctcaaagccagatccatccttggcat
tcttcagtatctaatcagcacctgcaaggcagaagtcgtgcggccttacaaggacaggaa
cttcaatcctgtaccacagtgaggcagcagaattcccagcacccaataagtttatcatct
cctccttccaagaagactgatggttcaggatcatatacgaagttgcagaatacccaggtg
agggcaatgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaag
gcaaatcgcataatatccgaagcaattgcaaaggcaaaagagagaggagagagaaatatt
ccacgagttatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaag
aagggtagaaaagttaaatccaaaccaaaggataaagagagcaaaaagccgaaaacaggt
tcttcatccaaaattaaagagaaaacaaaaattggaaagctgatcatcacactgggcaaa
aagcagaaaaggaaaaacgaatcttcagatgaattgtctgatgctaagcagactccacag
cagccactgaaagatgaagactcacagaagagaagatcaaatcgtcaagttaaaaggaaa
aaatatgctgaagaaggagaagggaaacaatcagaagaagaagcagctaaagtttctgtt
aaaatcaagaaaaattctgcccctttacctgctgaacagcctttgcaattatttgtggaa
aatccaagtgaagaagatgcagcaattgtagacaaaatcttatcgtctagggtaataaag
aaagaaatatctgctgggatgacagtagacacagaagagttttttgtcaaatacaagaac
tactcatatctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatc
cagcagaaaataaagcgattcaaagtaaggaaagcacaaagagctcacttttttgcagat
atggaagaggaaccttttaatcctgactatgttgaagtagaccgggtattagaagtgtct
ctttgtgaagataaagacactggtgagcctgttatttactatttagtaaaatggtgttca
ttgccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaa
gaatttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccacctcca
aactcctggaagaagattgaacagtccagggaatataaaaatggcaatcagctcagggaa
tatcaactggaaggacttaactggctcctgttcaactggtacaataggcgaaattgcatt
ttagcagatgaaatgggccttggcaaaaccattcagtccattacattcctgtatgaaatc
ctcctgactggtataagaggccctttcctgatcatcgctccactttccactataacaaac
tgggagagggaattccgcacgtggactgacctgaatgttgtggtgtaccacggaagtatg
atcagcaggcagatgattcagcagtatgagatgtacttcagggactcccagggccgtatt
gttcgaggtacctacaggttccaggccataatcacaacttttgaaatgattcttggtggg
tgtccagaattaaatgcaattgagtggcggtgtgttattattgatgaagctcacagactg
aagaacaaaaactgcaaacttttggaaggactaaaattaatgaaccttgagcataaagtg
ctgttaacaggtaccccactgcagaacacagtagaagaattatttagcctccttcatttt
ctggaaccattgcgttttcctgctgaatctacattcatgcaagagtttggagaccttaaa
acagaggaacaggttcagaaactacaagctatcctgaaacccatgatgctcaggagatta
aaagaagatgtagaaaaaaagctggctcctaaggaggaaaccataatcgaagttgaacta
accaatattcagaagaaatattaccgagcgattttggagaaaaattttgctttcttatcc
aaaggagcagggcaggcaaatgtacccaatctggttaacactatgatggaactcagaaag
tgttgtaaccacccttatctcatcaaaggtgctgaggaaaagatccttggagagtttaaa
gaaacatatagtccaaatgctcctgacttccacctgcaagcaatgatccagtctgctggt
aaattggttcttattgataagcttcttccaaaaatgaaagcaggaggccacaaggtcctt
atcttctctcaaatggtgcgctgccttgatattttggaggattaccttatacataaaagg
tacctgtacgagcgcatcgacgggcgcgtgcgggggaacctccggcaggctgccatcgac
cgcttcagcaaacctgactcggatcgcttcgtcttcctcctctgcaccagggctgggggt
ctgggcatcaacctgactgcagcagacacctgcatcatctttgattctgactggaatccc
caaaatgacctgcaggctcaagcccgatgccacaggattggtcagaacaaagcagtgaag
gtctacagactgatcacacggaattcctatgagagagagatgtttgacagagcaagtctg
aaactgggactggataaggctgtcttgcagagtatgagtggaagagaaaacagtgttggt
ggaatccaacaactctccaaaaaggaaatagaagatttgcttcgaagaggtgcctatggt
gccattatggatgaagaggatgaaggctccaagttctgtgaggaagacatagaccagatt
ctgcagcgtcggactaaaaccatcacgattgaatccgagggaagaggctccacgtttgcc
aaggctagttttgttgcatccggaaacaggactgatatttcactagatgatcccaacttc
tggcagaaatgggccaaaaaagcagaaatagatatcgatgctatcagtggtagaaacagc
cttgttattgataccccaagaatcaggaaacaaactcgacccttcagtgctacaaaggat
gagctggcagagctgtctgaggtggagagtgagggtgatgaaaaacccaagctgcgccgg
ccctgtgaccgctccaatggctacggaaggactgagtgcttccgtgtggagaagaacctg
ctggtctatgggtggggtcgatggagagaaattctgtcccatggtcgcttcaagaggcag
ctgaatgagcatgatgtggagataatctgcagggccctgttagcctattgtcttgttcac
tacagaggggatgagaaaataaagagttttatatgggatctcatcaccccaacagaggat
gggcaaacacgagaattacagaaccaccttggcttatcagcccctgtgcctagaggaaga
aaaggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagcagaatggctt
cgaaaatacaatccagaacatctgttgcaagatgaaggatacaaaaagcacataaaacac
cattgcaacaaggtcttacttcgagtaagaatgctgtattacttaaaacaagaagtcatt
ggtaatgaattccaaaaggtctttgatggaactgatgccagtgaaattgatgtttgggtt
cctgagccagaccactctgaagttcctgctgagtggtgggacgcagatgcagataaatct
cttctaattggagtttttaaacatggttatgaaaaatacaacactatcagagcagaccca
gctctttgcttcttggaaagggttggaaaaccagatgataaagcagttgctgctgaacag
agagcaaatgattatatggatggggatgtagaagatccagaatataaaccagcaccagca
ctgttcaaagatgacatagaggatgatgtttcatccccaggtgatctcgtaatagctgat
ggagatggacaaatgatggaaggggacaaaatctattggcccactcagtctgccttaaca
acgcgtctgcgccgcctgataacagcttatcaacgaacgagtaaaaacaggcaggcccag
cagctccagccaacattcccagtacaaaccagtatgatgcagcttccatatgaggaagct
gcactaaatccaaagatggctgctaagattgaaagacagcaaagatggacaagaagagaa
gaagctgacttttacagagtcgtgtccacatttggagtggtgtttgaccctgaaagggga
cggtttgactggaccaagtttcgagcaatggctcggttgcacaagaagactgatgagagc
ttggagaagtacctgtatgcgttcatgtcaatgtgcaggagggtctgtcgtctcccctca
aaagaagagctcgtggacccaaacatttttatccagcccatcacagaggaacgcgcttcc
cggactttgtaccgcatcgagctcctgcggaaagtgcgagaacaggctctcagacacccc
cagttgtttgagcgactgaagctgtgccagccaaacccagacctacctgtctggtgggaa
tgtgggactcacgacagggatttacttattggagctgctaaacacggagttagcaggaca
gattatcatatacttcgtgatcctgaactctcatttatgtctgcccagaggaactataat
caaaacaaagtggctctctcaaggacttctactccactcttgcaccagtaccagatggca
ttatcttcttctcctcttacacctcagtcaagactgtcagatgctaaagtgaatgctttt
gaggacacaaaagctaaaattgaaaatctgaaagaggaccctcagtcttctgaagaggaa
tctatgtctacagaggagacacagacagtactgaaatcagagcctttgagtcccaagaat
ggcaccccaatacaaattacagaccacagacctagcgtgaaggctgagacagacaggcgc
atggtggcagcaaggacagagcctctaactccaaacccagcttccaaaaaacaaagagtc
agcaaaagggggtctgactctagctctgactcagactctgattcagatagatcatcctgt
tcttccaggtcatcatcttcatcctcttcgtcttcctcatcttgttcccactctcgatct
ggctctagctcttcatcatcttcatcttgttcttcagcatcatcatcctcttcctcatca
tcctcatcatcatcgtcttcatcatcatcatcgtctgaagagagtgatagtgatgaagag
gaggcacagaaacgtgcagaaggaactccacatataaaagcctatgatgaagagagtgtg
gcctctctgagcaccacccaagatgagacacaagacagtttccagatgaacaatgggaca
ccaaattcaggttatctcctacaaggtggatacatgttggctgcatcctactggccaaag
gatcgagttatgattaaccgactggacagcatttgtcagacagtgttgaagggtaaatgg
ccttcagcccgaaggagctatgacagcaccacagtggcatcgttctacaccaccaaactc
ctggacagctcaggggcagctgcagagtacagtgagcccagtgcacccacaccccccctt
gcagctgtaaaagaagaatatgaccaatcaccccagctgtcaaaggtgaagaagcatgta
cgagaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcag
aagcagggactgtctcagaaaaggccatttgaaagcgaggagggtgcattgggtcagcag
cagtatctggctcggctacgtgaactccagaatgcttcagaaaccagccttgtcaacttc
ccaaaatcacttcccaaatcaggtacttccagtcacttaacagccagtgccaatggagta
atagttgatagtcagcctgtggtcaaaaagagacgaggaagaaggaagaatgtggagggt
gttgatgtcctctttatgaataggaataaacagcctaaccatgttaatccaggtatcaac
tcctgccaggttgctgcaggaataaacccagcactcacttacacacagtcccaaggcatg
cttgatgcagagagtcccgttcctgttattaatctaaaagatggaacaaggcttgcaggt
gatgatgcccctaaaagaaaagatttagaaaggtggcttaaagaacatcctggatatgtt
gaagattcaggagcttgtattcctaggatgcagctgcacgatgggaggcctaaacaaaaa
agacaccgttgtcgaaaccccaataaactggatgttaacagtttaactggtgaagagcgt
gttcagctcattaacagaagaaatgcaagaaaggttgggggtgcatttgctccccctctg
aaggatttgtgcaggttcttgaaagaaaatccagagtatggagtggctcctgagtgggga
gaagttgtaaaacagtctggcttcctccccgagggaatgttcgagcgcatcctgacgggc
ccggtggtgcgggaggaggtgagccggcgggggaggcgccccaagagcgagatcgccaag
gccacggcggcggcggccgcgtccgccggcgtctccgtcagccctctgctggccaacggg
ctgctcccgggggtggacctgcccggcctgcaggccctgcagcacaacctgcagaacctg
cagtcgctgcaggtgacggccggattgatgggaatgccggccggcctcgccgccgcggga
gaggccaagaacgtggctgccatgttccccatgctgctgtcagggatggctggattaccg
aacctgctgggcatgggaggactcctgacgaagtcgacagaacccgtgtcggaggagaaa
aagggaaacgattcgaaggagacggatacaaagaaagaaaggacagaagaccaaaatacg
gatactggtggtgaaaactctgtttcaagttctccttcaacatcctctgccgccgcagct
gccaatcctctctctcttaaccctttacttttgtccaacatactttacccagggatgctt
ctcactccaggccttaatcttcatatcccagctttgtctcagtctaatattttcgatgta
cagaacagtgaaagcaatgacacaggctcagccaagcccacagaagaaaaggaggaaaat
tctagggttagagatcaggaagacaaagggggaacagagccaagctctcacaacgaaaac
agcacagatgagggttcagagaaagcagatgcttcatctggatctgacagtacatcgtct
tcatctgaggattcggattcgagcgatgaagactga
DBGET
integrated database retrieval system
